Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03520 ATGGCGAAGGGAAAGCATGGGCATAACCGTGCACAGGGGAAGAAGTGGTCAACATTTTCTCTATTTTTGTGGATGTTTTTCTTCCTCACTCTTATCCTTGTCGTGCTCTTCGTTCTTGGCATTGTTTATATTCCGACTACCGATGACGATTTTCCAACCGCGGATCTCGCAGCCTTCAGGCGCAAGACCTCTCAAAGTTTGGAGGAAAAACCGGAGCAGTGGACGGAAATTCTCTCCTGGGAGCCGAGAGCTTTTATCTATCACAATTTTCTGTCGAAAGAAGAATGTGAGTACTTGATTGAACTTGCCAAACCTTACATGGTAAAGTCAAGTGTTGTTGATAGCAAGACTGGGAAGAGTACAGAAAGCAGGGTTCGAACTAGTTCAGGAATGTTTCTGAAGAGAGGAAGGGACAAAGTTGTTCAAGATATAGAGAAAAGAATTGCTGACTATACCTTCATACCTGTAGAAAATGGAGAAGGACTTCAAATTCTTCATTACGAAGTAGGGCAAAAATACGAGCCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGTGGTGAGACTGTATTTCCTGCAGCAACTGCAAATTTTAGCTCTGTGCCATGGTGGAATGATTTATCCCAATGTGCAAGAAAGGGTCTGTCCGTGAAACCAAAAAGGGGTGACGCTCTGCTATTTTGGAGCATGAGGCCCGATGCCTCATTAGACCCATCTAGTTTACATGGTGGTTGTCCAGTAATTAAAGGAAATAAATGGTCTTCGACAAAGTGGATGCATCTCCATGAGTACAAGGTTTAA 861 0.4286 MAKGKHGHNRAQGKKWSTFSLFLWMFFFLTLILVVLFVLGIVYIPTTDDDFPTADLAAFRRKTSQSLEEKPEQWTEILSWEPRAFIYHNFLSKEECEYLIELAKPYMVKSSVVDSKTGKSTESRVRTSSGMFLKRGRDKVVQDIEKRIADYTFIPVENGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVEEGGETVFPAATANFSSVPWWNDLSQCARKGLSVKPKRGDALLFWSMRPDASLDPSSLHGGCPVIKGNKWSSTKWMHLHEYKV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03520 286 FunFam Prolyl 4-hydroxylase 4 74 281 - -
Vimu10g03520 286 Gene3D q2cbj1_9rhob like domain 75 281 - -
Vimu10g03520 286 Pfam 2OG-Fe(II) oxygenase superfamily 162 280 IPR044862 -
Vimu10g03520 286 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 158 281 IPR005123 -
Vimu10g03520 286 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 65 283 IPR045054 -
Vimu10g03520 286 SMART p4hc 82 280 IPR006620 GO:0005506|GO:0016705|GO:0031418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03520 Vimu-Chr10 44828329 44841442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03520 K00472 - gmx:100818586 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03520 10 44828329 44841442 Vimu10g03520 10 44828329 44841442 ECH