Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03519 ATGAGAGCGGTGATGAAGGATGAAACTCAAGCCGTGGTGAATGATAATTCTCACAACGGCAAATTCTCACATCTCCTTGCTTCCCAAGATCGTGATTATCTTCTTTCTCCAACTGGGGCTCAGGTGAAGGTGAGTGATCTTGAAGGGAAAGTAGTGGGTCTATTATTCGGTGCGAATTGGTACCCACCATGCCGCGTATTCACCCAAGCCCTAGTTGGAATCTACGAGGAGTTGAAAAGCCGTTTCCCTCAGTTTGAGATTGTGTATGTGTCCTCTGACGAAGACTTGGATGCTTTCAGTAGCTTCTATGGAAACATGCCATGGCTAGCGATACCGTTCTCTGATTTGGAAACGAAGAAATGGTTGACCAGAAAGTATGAAGTGGAAGGCATTCCGTGCTTGATTTTGTTGCAACCAGAGGATGGTAAAGATGAGGAAACAGTTCGCGATGGGGTTGAACTTATTTACCGTTACGGAGCCGAAGCTTACCCGTTCTCTAACGAGAGGTTGGAGCAGCTGCGAAAGGAAGACAAAGTGAAGCGTGAAAACCAGACCCTCCTGAATTTGCTGTCAAACCAGCATAGAGACTATGTTCTGAGTCACACTCACTCTGGATTTAAACAGGTACCTGTCGCTTCTCTAGTGGGTAAAACAATTGCACTCTACTTCTCCGCCGAGTGGTGCGTGCCATGCGCGAAGTTTACTCCCAAACTGATTTCCGTTTACGAGAAGATTAAGCAGGAGCTAGCCGAGAAGGGAGAGGAAGACTTCGAAGTTGTGCTGGTATCCAGCGACCGTGACAAAGCATCCTTTGAGTCATACTACAGCAGCATGCCTTGGTTAGCCTTGCCTTTCGGTGATTCCGAGATGAAGAACCTCGTCCGACACTTCAACGTGCAAGGGATTCCATGGTTGGTGATCGTAGGTCCTGATGGAAAAACAATAACAGTGCATGGTAGGAGCTTGATAAACTTGTACCAAGAGAACGCGTACCCTTTCACGAACGCCAAAGTGGAGGAGCTGGAAAAGAAGCTCGAGGAAGAGGCGAAGGATCTTCCGGCACTGGTTTATCACGAAGGTCATCGGCATGACCTGAATTTGGTGTCTGATGGGAACGGTGGAGGACCCTTTATCTGCTGTGTGTGCGATGAACAAGGGTCTAGTTGGGCCTACCAGTGTCTCCAATGTGGTTATGAAGTGCACCCCAAATGCGTCAGAACAGTCGACCGTCAGAACAGTGTGTTAATAACTAATTAA 1257 0.4773 MRAVMKDETQAVVNDNSHNGKFSHLLASQDRDYLLSPTGAQVKVSDLEGKVVGLLFGANWYPPCRVFTQALVGIYEELKSRFPQFEIVYVSSDEDLDAFSSFYGNMPWLAIPFSDLETKKWLTRKYEVEGIPCLILLQPEDGKDEETVRDGVELIYRYGAEAYPFSNERLEQLRKEDKVKRENQTLLNLLSNQHRDYVLSHTHSGFKQVPVASLVGKTIALYFSAEWCVPCAKFTPKLISVYEKIKQELAEKGEEDFEVVLVSSDRDKASFESYYSSMPWLALPFGDSEMKNLVRHFNVQGIPWLVIVGPDGKTITVHGRSLINLYQENAYPFTNAKVEELEKKLEEEAKDLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVDRQNSVLITN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03519 418 ProSiteProfiles Thioredoxin domain profile. 188 350 IPR013766 -
Vimu10g03519 418 ProSiteProfiles Thioredoxin domain profile. 24 175 IPR013766 -
Vimu10g03519 418 Pfam C1 domain 360 405 IPR004146 -
Vimu10g03519 418 SUPERFAMILY Thioredoxin-like 197 318 IPR036249 -
Vimu10g03519 418 Coils Coil 331 351 - -
Vimu10g03519 418 SMART c1_12 361 410 IPR002219 -
Vimu10g03519 418 SUPERFAMILY Thioredoxin-like 34 140 IPR036249 -
Vimu10g03519 418 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 360 412 IPR002219 -
Vimu10g03519 418 Pfam Thioredoxin-like 216 313 IPR012336 -
Vimu10g03519 418 Pfam Thioredoxin-like 49 142 IPR012336 -
Vimu10g03519 418 Gene3D Glutaredoxin 25 167 - -
Vimu10g03519 418 Gene3D Glutaredoxin 195 335 - -
Vimu10g03519 418 PANTHER THIOREDOXIN 15 389 - -
Vimu10g03519 418 CDD C1 379 408 - -
Vimu10g03519 418 SUPERFAMILY Cysteine-rich domain 349 406 IPR046349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03519 Vimu-Chr10 44823675 44828190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03519 K17609 - gmx:100808125 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03519 10 44823675 44828190 Vimu10g03519 10 44823675 44828190 ECH