Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03516 ATGACTCAAGATCTCGAGATGAAGGATCGCTCAATACCTTCCAACTCCGTTTCTTCACCTGCTCCGTCTACACTGCAGCATTTGAGGGAGATAGCGTCGCTTATCGAGACCGGTTCGTACTCGAAGGAAGTCCGTAGAATTGCTCGTGCTGTTCGCCTTACAATTGTGTTGAGGCGTAAATTAACATCGTCAATTATCTCGGCTTTTCTTGATCATGTCCTCACTCCTGGTTCTGAAGCTCATACCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCACGAGATGGAAGTGGATGCCGCAACATCTGCAATTCAAACTCCAGCTAAACACTTGTTACCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATAAAAAAAAATACAATGAGGCCAAAGCTTGTTCCTCGGCAAGCATTGTTTGGCTGAAGAACACAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATCCGTGGTAACCTCCTTGCGTTGCACCGAATTGCCACCCTTCGCCATGACGAGTTGGGCCAGGAAACACTTCTTAATTTGTTACTCCGTAACTACCTTCACTACAATCTATATGATCAGGCCGAAAAGTTGAGGTCTAAGGCTCCTCGATTTGAAGCGCATTCAAACCAACAGACAAACCTATCTATTGCTCATCAATGTTGTGATAAAGACCTTGTGGAGGTCCTCGATAATGGTGTTATTTTCTGTCGTTACCTCTTCTACCTTGGGAAAATTCGGACAATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCCCGGAAAGCCCCAGTTGCTGCACGGGGTTTTCGTATTCAATGTAACAAGTGGGCTGTGATAGTTCGGTTACTGTTGGGAGAAATACCTGAGCGCACTGTCTTTATGCAGAAAGGAATGGAAAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTACGGATTGGAGACTTGGAACTTTTTAGGAATATTGCAGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGATTGCGGCATAATGTTATCAGGACTGGTTTACGTAACATCAGCATCTCCTACTCCCGCATCTCTCTAGCTGATGTAGCTAAAAAGCTGAGGTTGAACTCTCCAAATCCTATTGCTGATGCCGAGAGCATTGTTGCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAACGGGTGGATGGTCTCCAAGGAAACCGGAGATATTTACTCGACAAATGAGCCTCAGTTGGCCTTTAATTCTCGAATTGCATTCTGTCTTAACATGCACAATGAGGCAGTACGAGCACTTCGTTTTCCACCAAACACACACAAAGAGAAGGAGAGTGCTGAAAAGAGGAGAGAGAGACAACAACAAGAGCAGGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGACGATTTCTGA 1533 0.4403 MTQDLEMKDRSIPSNSVSSPAPSTLQHLREIASLIETGSYSKEVRRIARAVRLTIVLRRKLTSSIISAFLDHVLTPGSEAHTKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDKKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQTNLSIAHQCCDKDLVEVLDNGVIFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSPNPIADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03516 510 FunFam probable 26S proteasome non-ATPase regulatory subunit 3 265 465 - -
Vimu10g03516 510 Pfam Proteasome regulatory subunit C-terminal 443 509 IPR013586 GO:0000502|GO:0030234|GO:0042176
Vimu10g03516 510 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 14 501 - -
Vimu10g03516 510 Pfam PCI domain 334 439 IPR000717 -
Vimu10g03516 510 Coils Coil 477 504 - -
Vimu10g03516 510 MobiDBLite consensus disorder prediction 475 503 - -
Vimu10g03516 510 Gene3D - 267 464 - -
Vimu10g03516 510 ProSiteProfiles PCI domain profile. 262 443 IPR000717 -
Vimu10g03516 510 MobiDBLite consensus disorder prediction 475 510 - -
Vimu10g03516 510 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g03516 510 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 368 461 IPR000717 -
Vimu10g03516 510 SMART PCI/PINT associated module 174 368 - -
Vimu10g03516 510 SUPERFAMILY "Winged helix" DNA-binding domain 369 444 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03516 Vimu-Chr10 44783673 44788297 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03516 K03033 - gmx:100814379 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03516 10 44783673 44788297 Vimu10g03516 10 44783673 44788297 ECH