Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03505 ATGCAGCAAGGAGATTTCACCTCTGTTCCTCCGTATTATCAATTTTCTCATCCCCAAAACCCCATCCCCAACCCCAATCCCAACCCTTCCGATCCCAACCCCAACAACCTCTACGCTTCTGCGCCTCCTTTCACCCCCAATTACGCTCCGTCAGATTACACCAACTATCATCCTTCTTACCCTCAAAATCTTGATCCTATTCCACCCACTGCTCCTCCTTCTTTTCCTCCCTCTTCCTCCAACCCTAATTTCAACTCGCCCTTCGAATCAAACCCTTCCTACCAACAACCACAACAACAACCCTATTTCCCACCATACGATCAGCATCAAACGCATCCCAATTACGCCCCTCCCAACCCCAGTCCCGCTCCCTCCCTATACAACTCTGCTCCCTACAGCTACACCGGAGGCTCCTCCGTTCCGCCTATTCCGACCTATGAACCACCCGCCTATGAGCCTCCCGTGAGGTCTGATCATGGCGGCGGATATTTAGACGACAGGTACGGAGGCAGCTTCAATCGGAGCCGGTCTGAGTTGGGATCGGATTATTATGGAAAGAGCGGTGGTAATTCGAGGTACGAAGGTGGCGGCGGCGGCAGTGATGATGGCTATGGAGATGGGGTGTATGCTTATCAGGGAGGGAAGGTGGAACCGTATGGGGCGCGTGGCACGGCGCCGAAATCATCGACTTGGGCGTCGTTTGATGATTACGGGAGGTCTATCAGTTTCCCCTCTCATAAGGAATCTTCTGGGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGTTGATACCCATGAAGACGTTAAAGGCGGTGGCGTGCAAAAGTTTCGGGTCAAGCTATTGGCGGAAAGTGGGGGTCAGAGCACCATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAATACCAGCCGGACATTGAGGATTTATCCTCTTGAGAATATAACAAGATGTGATAGAGTCGATTCGTCCACCTTTGCATTTTGGTCAAAAAGCCCTGTGGATATTGAGCCAAGACGAATCAGATTGCAATCTAACAGTTATACCACCAACACACTCTTGGATACAGTGACTGCTGCAACAATACAGTTCAAAGAAATGGGTGGAAGCAGAAGGCCTTCTGAGCCTGTGAAAGCAAATGAACAGACTCAAGAAAGAAAGAAAGGTTTTGGCGATTGGATGAATCTGATTAAACCTGCCAATGAAGAAAAGGATCATTGGGTTCCAGATGAGGCTGTAACAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTATTCGCAAGCACCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTAACTACTGAAGAGAATGCACAGCCTGTGCGAGTTTGTGATCGGTGCATGGGAGAAGTTTCTCTGCGGCTAAGTAGTGCCCGGGAGTCATCAAGTAAACCTACGTTGCAGAGTCATGAGGATCTTGCCAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGACATCAGGTTCCAAGTCTGATGGATCTGCAAGGCGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCACCTGCAGGTTCAGGTGCCCAGCTCGGGTTCAGAGACCATTGAGTGTGGAGTGTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1683 0.4944 MQQGDFTSVPPYYQFSHPQNPIPNPNPNPSDPNPNNLYASAPPFTPNYAPSDYTNYHPSYPQNLDPIPPTAPPSFPPSSSNPNFNSPFESNPSYQQPQQQPYFPPYDQHQTHPNYAPPNPSPAPSLYNSAPYSYTGGSSVPPIPTYEPPAYEPPVRSDHGGGYLDDRYGGSFNRSRSELGSDYYGKSGGNSRYEGGGGGSDDGYGDGVYAYQGGKVEPYGARGTAPKSSTWASFDDYGRSISFPSHKESSGGGKIVKAVPKVDTHEDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRVDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPSEPVKANEQTQERKKGFGDWMNLIKPANEEKDHWVPDEAVTKCTACGTDFGAFIRKHHCRNCGDIFCDKCTHGRIALTTEENAQPVRVCDRCMGEVSLRLSSARESSSKPTLQSHEDLARKLQEELERNRKTSGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03505 560 MobiDBLite consensus disorder prediction 126 140 - -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 1 15 - -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 81 107 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 17 29 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 34 50 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 66 78 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 118 134 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 140 157 - -
Vimu10g03505 560 PRINTS Proline rich extensin signature 92 113 - -
Vimu10g03505 560 Coils Coil 490 510 - -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 1 199 - -
Vimu10g03505 560 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 415 475 IPR017455 -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 33 61 - -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 62 80 - -
Vimu10g03505 560 Pfam FYVE zinc finger 411 475 IPR000306 GO:0046872
Vimu10g03505 560 PANTHER PROTEIN FREE1 1 560 IPR045893 GO:0036258|GO:0043130
Vimu10g03505 560 SUPERFAMILY PH domain-like 277 338 - -
Vimu10g03505 560 SMART fyve_4 407 476 IPR000306 GO:0046872
Vimu10g03505 560 CDD PTB 262 333 - -
Vimu10g03505 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 477 IPR013083 -
Vimu10g03505 560 SUPERFAMILY FYVE/PHD zinc finger 410 481 IPR011011 -
Vimu10g03505 560 MobiDBLite consensus disorder prediction 16 32 - -
Vimu10g03505 560 FunFam Zinc finger, FYVE-type, endofin 402 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03505 Vimu-Chr10 44680432 44685807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03505 393 471 EF-hand Containing Proteins AT3G14270 34.409 1.47e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03505 - - gmx:100794840 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03505 10 44680432 44685807 Vimu10g03505 10 44680432 44685807 ECH