Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03486 TTGGGAAAGGAAAAAAAAGAAAAAAGAAGAAGAATGAAGGGAAGCAAGAGGCCGATCCACGCCGTGACGACATGGTTTCGGCGGCAACCGCCCAAGATGAAGGTCTTTCTTGCGGTGCTAATCGGCCTGGCCGCCTTGCTCTTCCTCAGAATCGTTGTTCATGACCACGATAGCCTTTTCGTTGCCGCCGAGTTTGTCCATGCATTAGGAATCTCCGTCCTCATTTACAAACTCACCAAGGAAAGAACCTGTGCCGGGCTTTCGCTGAAATCGCAGGAGCTGACGGCAATATTCCTAGGCGTAAGACTTTACTGCAGTTTTGTGATGGAATATGATATACACACCTTACTCGATATGGCAACATTGGGGACGACCATCTGGGTTATTTATATGATACGCTTCAAACTCAAATCTAGTTATATGGATGATAAGGATAACCTTGCAACATACTATGTGGTGATACCTTGTGCTGTGCTGTCCTTGTTTATTCATCCAACAACCCGACATCATACAATTAATAGGATTCTCTGGGCATTTTGTGTTTATCTTGAAGCTGTTTCTGTTCTCCCTCAGCTGCGGGTCATGCAGAATGCTAAGATCGTTGAACCATTCACCGCACACTATGTTTTTGCCCTGGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTTCTCCAGGTAATAGATACTCGTGGACGTCTACTAACTGCATTGGGTTACGGATTGTGGCCTTCATTTGTTCTTTTATCAGAAATTGTTCAAACTTTCATCCTGGCAGATTTTTGCTACTACTACGTCAAGAGGTGGATATCTTGTCGGAGGACAACTTGTTGTTCGACTTCCTGCAGGAGTGGTGTAATTTTGACTTTCCTTCTCAGATTCCTCAAGTTGAGCAAGCCTTTGGCTTGTGGCACTCAGAAAGTTACTTTATTTTCTACTTTCTCTTCCCAGATTCACACATCACCATCTTCCAAAGCCATAGTTGGC 987 0.4448 MGKEKKEKRRRMKGSKRPIHAVTTWFRRQPPKMKVFLAVLIGLAALLFLRIVVHDHDSLFVAAEFVHALGISVLIYKLTKERTCAGLSLKSQELTAIFLGVRLYCSFVMEYDIHTLLDMATLGTTIWVIYMIRFKLKSSYMDDKDNLATYYVVIPCAVLSLFIHPTTRHHTINRILWAFCVYLEAVSVLPQLRVMQNAKIVEPFTAHYVFALGVARFLSCAHWVLQVIDTRGRLLTALGYGLWPSFVLLSEIVQTFILADFCYYYVKRWISCRRTTCCSTSCRSGVILTFLLRFLKLSKPLACGTQKVTLFSTFSSQIHTSPSSKAIVG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03486 329 Pfam ER lumen protein retaining receptor 83 225 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu10g03486 329 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 59 268 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu10g03486 329 PRINTS ER lumen protein retaining receptor signature 199 213 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu10g03486 329 PRINTS ER lumen protein retaining receptor signature 86 106 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu10g03486 329 PRINTS ER lumen protein retaining receptor signature 59 78 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu10g03486 329 PRINTS ER lumen protein retaining receptor signature 177 197 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03486 Vimu-Chr10 44560661 44564747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03486 15 267 Miscellaneous Gene Families AT4G38790 79.842 4.26e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03486 - K10949 gmx:100787747 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03486 10 44560661 44564747 Vimu10g03486 10 44560661 44564747 ECH