Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03477 ATGCTTCGCGTTAGGTCCAAAGGAGGGTGTTGCGGTTGGTTCATCGCATTTGTCGTTCTGGCCGTCGTCGTCGGTGCTGTTGTTTTTACCGTCAAGAAGAAATTCGGTCATTCCGGTTCTGATAAAGCTGCTCCAGTTCCCGGTCCCCCTGGCGCCGTTGATCAAAAATACGCCACTGCACTAAAAACCTCACTGCAATTCTTCGATATTCAAAAATCTGGGAAGTTAGTCAACAACAAAATATCTTGGAGAGGGGATTCGGGTCTTAAGGATGGGAGCCAAGCGAATCTGGATCTCACAAAAGGACTGTATGATGCTGGGGATCACATGAAATTTGGTTTGCCGTTGGCTTATACGGCGACGGTGTTGTCGTGGGCCATTCTGGAATATGGAGATCAAATGGATCACGTTGGCCAGTTAGACTCGGCTCAAGATTCGCTCAAGTGGATCACTGATTATCTCATCAATGCTCACCCTTCTGCTGATGTTCTTTACATTCAGGTGGGTGATCCTGTTGCAGATCACAAGTGTTGGGAAAGACCAGAAGAAATGACTGAAGCTCGACCACTCACACAAGTGAATGCATCTCATCCTGGATCAGACATTGCAGCAGAAACTGCAGCTGCCATGGCCTCAGCATCTTTGGTCTTTAAAAAGTCTAATTCTTCGTATTCAAGCACACTCCTCAAGCATGCAAAACAGTTGTTCACTTTTGCTGACAAAAATAGGGGATATTATAGTGAGAGTATACCTGAAGTTCAGACATATTATAACTCAAGTGGATACGGTGATGAGCTTTTATGGGCTGCTAGCTGGCTCTATCATGCTACGGGTGATGATTCTTACCTTGAGTTTGTGACTGGCCAAGATGGAGAAGACTATGCTGAATGGGGAAGCCCAACCTGGTTCAGTTGGGATAACAAGCATGCTGGAACTCAGGTTTTGTTAGCTAGATTAAGCTTTTTTAAGGCAAAGGGCATTTCAGATTCGTATGGCTCTGGGCTCCAAAGTTACAAGGAAACAGCCGAGGTTGTAATGTGCAGCCTTCTTCCGGATTCACCATCAGCCACAAAAAGCAGAACAGAGGATGGTCTTATATGGGTGGCCGAATGGAACTCTTTGCAACATGCTGTTGCATCTGCGTTCCTAGCTGTTATTTACAGTGACTATATGCTAACATCGCAGACACCAAATCTAAAATGTGATTCAGATTCCTTTACCCCATCAGATCTTCGAGACTTTGCCAAATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTATGGATATGAGTTTTCTGGTGGGTTACGGTGATAAATTCCCGCAATTCGTGCATCATAGGGGTGCTTCAATTCCTGTCGATGCAAAAACTGGGTGCAGTGATGGTTTCAAGTGGCTTGAATCATCTGATCCAAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCCTTCAAGAATGACACTTTCATTGATTCCAGGAACAATACAATGCAAACAGAACCAAGCACGTACAATAGTGCTGTCATAGTCGGTCTCCTATCAAGTTTAGTCACCACGTCTTCTGTTGTTCAATCCTTCACCTAA 1587 0.4505 MLRVRSKGGCCGWFIAFVVLAVVVGAVVFTVKKKFGHSGSDKAAPVPGPPGAVDQKYATALKTSLQFFDIQKSGKLVNNKISWRGDSGLKDGSQANLDLTKGLYDAGDHMKFGLPLAYTATVLSWAILEYGDQMDHVGQLDSAQDSLKWITDYLINAHPSADVLYIQVGDPVADHKCWERPEEMTEARPLTQVNASHPGSDIAAETAAAMASASLVFKKSNSSYSSTLLKHAKQLFTFADKNRGYYSESIPEVQTYYNSSGYGDELLWAASWLYHATGDDSYLEFVTGQDGEDYAEWGSPTWFSWDNKHAGTQVLLARLSFFKAKGISDSYGSGLQSYKETAEVVMCSLLPDSPSATKSRTEDGLIWVAEWNSLQHAVASAFLAVIYSDYMLTSQTPNLKCDSDSFTPSDLRDFAKSQADYVLGKNPMDMSFLVGYGDKFPQFVHHRGASIPVDAKTGCSDGFKWLESSDPNPNVATGALVGGPFKNDTFIDSRNNTMQTEPSTYNSAVIVGLLSSLVTTSSVVQSFT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03477 528 Pfam Glycosyl hydrolase family 9 57 514 IPR001701 GO:0004553|GO:0005975
Vimu10g03477 528 PANTHER ENDO-1,4-BETA-GLUCANASE 21 519 - -
Vimu10g03477 528 FunFam Endoglucanase 53 522 - -
Vimu10g03477 528 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 421 447 IPR018221 -
Vimu10g03477 528 Gene3D - 54 521 IPR012341 GO:0005975
Vimu10g03477 528 SUPERFAMILY Six-hairpin glycosidases 55 519 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03477 Vimu-Chr10 44505999 44512848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03477 9 527 Glycoside Hydrolase AT1G75680 68.654 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03477 - - gmx:100820195 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03477 10 44505999 44512848 Vimu10g03477 10 44505999 44512848 ECH