Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03474 ATGGTGGTGGAATTGATTATGGAGTTTGCACCGGAGTTTTTTGCGATGGATCGACGCTGGCCTTGGAAGAAAAAATCATCGGAGAAGGCTGTGATTGAGAAAGCAGCTACTGCATTGGATTCCTCCGATGCTTCCCACAACCAGGATAACAATAAACCAAACTACGTCCAAATCTCTGTGGAATCCTACACACATCTGTCTAGCTTGGACGATCAAGTGAAGACATATGAGGAAAAAGTTCAGGCACTGGAGGATGAGGTCAAGGAAATCAATGAAAAGCTGTCCGCAGCAAACTCCGAGATAAATACCAAGGAAAGCATGGTAAAGCAACATGCTAAAGTTGCTGAAGAAGCTGTATCGGGTAAAATGCTTCGTGATTTTATTTATCATCTTATACATGCTAAAGTAGCTGAAGAAGCTGTATCAAGCTGGGAAAAGGCTGAATCTGAGGCTTTGGCATTGAAGAATCATCTAGAATCTGTCACTCTTTTGAAACTCACTGCTGAGGATCGTGCAACACATTTAGATGGTGCTCTTAAAGAGTGTATGCGACAAATCCGGAACCTTAAGGAAGAACATGATCTGAAAATACAGGAAGTTGCTCTCTCAAAAACCAAGCAGTTAGACAAGATTAAGGGGGAGCTCGAGGCAAAGATAGCGAATTTTGAACAGGAACTTCTTAGGTCTGCAGCTGAAAATGGGGCCCTGTCAAGGTCATTGCAGGAGCGCTCTAACATGCTAATCAAATTAAGTGAAGATAAGGCTCGCGCTGAGGCTGAAATCGAGCTTCTTAAAGGCAACATAGAAGCATGTGAAAGGGAAAATAATTCAATTAAATATGAACTACATGTTGTTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTCTGAGGTCTGCCGAAGCTGCTAACAAGCAGCACATGGAGGGTGTAAAAAAAATTGCTAAGTTAGAGGCTGAGTGCCAAAGATTACGTGGTCTCGTGAGGAAAAAGTTACCTGGTCCTGCTGCACTTGCACAGATGAAGCTAGAAGTTGAAAGCCTGGGCCGAGATTTTGGAGAAAGTCGATTAAGGAAGTCCCCTGTGAAGCCTGCTTCCCCTAATTTGTCTCCATTACCCGATTTTTCTCTGGAGAATGTGCAGAAATTCCAGAAGGATAATGAATTTCTTACAGAGCGTTTATTGGCAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCTAAACGTAACAGTGAGTTGCAGGCCTCAAGGAGTATGTGCGCCAAAACATTGAGCAAACTTCAAAGTTTGGAAGCACAGTCTCAGACAAGTAACCAGCTGAAAGGATCTCCAACATCCATCGTCCAGATAACTCACGAAAGCATTTATAATCAAAATGCAAGCAGTGCACCAAGCTTCGTCTCCATGTCCGAAGATGGAAATGACGATGCAGTAAGTTGTGCTGAATCTTGGTCTACAGCAATAGTTCCTGGGCATTCCCAATTTCCTAAAGAAAAGTGCACTGAGGAATCAAGCAAATCTGAGGTCTCTAATAAGTTGGAACTAATGGATGACTTCCTGGAGGTGGAGAAATTGGCTCGTTTGTCAAATGATTCCAATGCAGACGCCACTGTTTCAGTTTCATCAAACAATAAGACAACTGACACTGTGACTGATGATGTATCAGAAGCCCGTATTGGCAAAGAAGGTCCATCTGAAAAAAATGGCAATTCAAATCCATTGCCAAATAAAGTGTCTTCTGATGCTTTGATGTCAGCCCCCGATCCTCAATCTGATGCTAGTGGCTTGATGTTAACAGAACTTAGATCAAGAATATTACTGGTTTTTGAATCCTTATCCAAGGATGCTGACATAGAGAAGATTGTGGAGGATATCAAACATGTGATTGAAGATTCGCATGACATTACTGTCCGCCACTCGGTGGATGCCCATCCTTCCGATGCTACGTGTGATAGGAAGGTTGATCTTGAAGATGCTGGCCTAAACCTTGAAAAGGACATCATTTCATCCCAGCAACCCGGAGAACATGTGCGTATAACTTCAGATTTGGAAGCTGCTATTTGTCAGATTCACGAATTTGTACTGCTCCTTGGCAAGGAAGCAATGACATTTCATGACATCTCTTATGACGGAAATGAAATGAGGCAAAAGATTGAGGACTTCTCCGTCACATTTGATAAAATATTAAGCAACAATGCAAGTTTGCTACAGTTTGTTCTTGACCTGTCCTATGTTCTAGATAAAGCAAGCGAGTTCAGATTTAATGTTCTCGGCTACAAGGGCACAGAAGTTGAAAGTAACAGTCCTGATTGCATAGATAAGATTGCTCTGCCAGAAAATAAATTAGTACAAGACAATTCATCCGGAGAAAGATATCAAACTGGCTGTTCCCATATTCTTAGTTCGTCTTCTAATCCTGAGGTTCCCGACGATGGGAATTTGATCTCAGGTTTTAGAGTGGACGCTGCATCACAAAAACTGTCAATGCAAAAGTTTGAAGAATTGAAACTAGAGAAAGAAAAACTGGTGACTGATCTGTCAAATTGTACTGAAACTCTTGAAATAACCAAGTCTCAGTTGCTAGAGACTGAACAACTTCTAGCTGAAGTTAAATCACAATTGGCTTCTGCTAGAAAATCAAACAGCTTGGCTGAGACGCAGCTAAAGTGTATGGCAGAATCGTACAAGTCTCTTGAAACACGTGCCCAGGACTTGGAAACTGAGCTGAACCGTCTGCAAATTAAGATAGAATCTCTGGAGAATGAACTTCAAGATGAAAAGAAGGCTCATGAAGCTGCTTTGACTCGGAGCAAGGATATAGAAGAGCAGTTACAAAGGATTGAATACTCGGCAGCTGATGATGACCACAAGACTTCGCATGATAGAGATTTGACAGCTGCTGCTGAAAAGCTAGCCGAGTGTCAGGAAACCATACTTCTTCTGGGCAAGCAGTTAAATGCTCTACGTCCACAAACTGAGTCAATCGATTCATCGTACAGTAAGTTAAACCCGAATGATGAAGGATTCACAGAAGATGAACCCACCACCAATGGTCCAAAATTTCAAGAATTAGGGCAGATGGAGATGGACCATGCTACTTCTGCTTTCGTTCAAAGATTGAGTTCGGAGTCTCCGTTACATTTTTCCAACAGTTTATTTAGCCCTTCGGACAGCGAGTCCACCCTTCCAGCCAGATCCCCAGTACAGCAATCTAAATCAAAACCAAAACACAGACCCACCAAGTCAGCCTCTTCTTCAGTTTCTTCTGCCACCACTCCCGAGAAGCATGCAAGGGGATTTAGTAGATTCTTTTCACCAAAAGGAAAATCCGGTCATTAA 3354 0.4219 MVVELIMEFAPEFFAMDRRWPWKKKSSEKAVIEKAATALDSSDASHNQDNNKPNYVQISVESYTHLSSLDDQVKTYEEKVQALEDEVKEINEKLSAANSEINTKESMVKQHAKVAEEAVSGKMLRDFIYHLIHAKVAEEAVSSWEKAESEALALKNHLESVTLLKLTAEDRATHLDGALKECMRQIRNLKEEHDLKIQEVALSKTKQLDKIKGELEAKIANFEQELLRSAAENGALSRSLQERSNMLIKLSEDKARAEAEIELLKGNIEACERENNSIKYELHVVSKELEIRNEEKNMSLRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDFGESRLRKSPVKPASPNLSPLPDFSLENVQKFQKDNEFLTERLLAMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQSLEAQSQTSNQLKGSPTSIVQITHESIYNQNASSAPSFVSMSEDGNDDAVSCAESWSTAIVPGHSQFPKEKCTEESSKSEVSNKLELMDDFLEVEKLARLSNDSNADATVSVSSNNKTTDTVTDDVSEARIGKEGPSEKNGNSNPLPNKVSSDALMSAPDPQSDASGLMLTELRSRILLVFESLSKDADIEKIVEDIKHVIEDSHDITVRHSVDAHPSDATCDRKVDLEDAGLNLEKDIISSQQPGEHVRITSDLEAAICQIHEFVLLLGKEAMTFHDISYDGNEMRQKIEDFSVTFDKILSNNASLLQFVLDLSYVLDKASEFRFNVLGYKGTEVESNSPDCIDKIALPENKLVQDNSSGERYQTGCSHILSSSSNPEVPDDGNLISGFRVDAASQKLSMQKFEELKLEKEKLVTDLSNCTETLEITKSQLLETEQLLAEVKSQLASARKSNSLAETQLKCMAESYKSLETRAQDLETELNRLQIKIESLENELQDEKKAHEAALTRSKDIEEQLQRIEYSAADDDHKTSHDRDLTAAAEKLAECQETILLLGKQLNALRPQTESIDSSYSKLNPNDEGFTEDEPTTNGPKFQELGQMEMDHATSAFVQRLSSESPLHFSNSLFSPSDSESTLPARSPVQQSKSKPKHRPTKSASSSVSSATTPEKHARGFSRFFSPKGKSGH 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03474 1117 Coils Coil 240 281 - -
Vimu10g03474 1117 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 16 121 - -
Vimu10g03474 1117 Coils Coil 286 323 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 537 596 - -
Vimu10g03474 1117 Coils Coil 205 232 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 1085 1100 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 1056 1117 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 996 1026 - -
Vimu10g03474 1117 Coils Coil 858 948 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 1056 1075 - -
Vimu10g03474 1117 Pfam Filament-like plant protein, long coiled-coil 133 999 IPR008587 -
Vimu10g03474 1117 Coils Coil 66 107 - -
Vimu10g03474 1117 SUPERFAMILY Tropomyosin 835 1016 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 537 555 - -
Vimu10g03474 1117 Coils Coil 383 410 - -
Vimu10g03474 1117 Coils Coil 172 199 - -
Vimu10g03474 1117 MobiDBLite consensus disorder prediction 570 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03474 Vimu-Chr10 44467674 44471938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03474 - - gmx:100782834 1803.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03474 10 44467674 44471938 Vimu10g03474 10 44467674 44471938 ECH