Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g03464 | ATGTCTGCATCTGAAGCGGAGAAGAAGGTGGAGGAAGAGAGGGAGGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGCCGGCGCAAGGGCATCGTCGACGGCAACCTCGTCTCTCCCTCGCGCCTCCGTCCTCTTGTCGGTGTTGATATTCGTTTCGTCGCGTCCGGTTGCGTCTCTTGTCATTGCGTTGCTTTGGACGTCGAAGGGCGTTGCTACACTTGGGGACGGAATGAGAAAGGGCAACTGGGTCATGGAGATATGATTCAACGTGACAGACCAACTGTTGTGTCTGAACTTTCCAAGTACAAAATTCTCAAAGCTGGAGCAGGGAGGAGCCACACTGTGGTTGTTACGGAGGATGGAAATTCCCTGGCCTTTGGATGGAACAAGCATGGACAGCTAGGTTCGGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCTGTTGAAGGAGCTTCTATATTAACTGCAGGGCTTCCACAGTATGGACAGCTTGGGCACGGTACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGCCCTAGAGCAATTGCTGCTCTTGCTGGGGAAACAGTTGTGAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTATGTCTACACGTGGGGTTTTGGTGGTTACGGAAGGCTAGGACATAGAGAGCAGAAGGATGAGTGGGTCCCACGCCGTGTTGAAATTTTCCAGAATAGAAATCTTTTACCACCGGATGCCATTGTTTCGGCTGGTTCTGTGAGTTCTTCATGTACAGCAGGTGGTGGGCAGTTGTACATGTGGGGAAAATTAAAGAACACTGGGGACGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGGTTGTACTATATTCCATGTGGGTGGAATATACGATGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGTGAGCTGGGATATGGACCTAATGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATATACTTGAGGGTATGCATGTAATAAGCGTTGCTTGCGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGGAAAGCTGTTGGTGAAGGTAATGAGGTTGTAAATACTACTGCAGCTCCCAAGCAGGCAGCAAAAAAGGGTGCGAAGGCAGCTGAGAATTCGAAGAAGAGGAAAAAGTCGAAAGATTCATCGGAGTCAGAAGATGAAGAGGAAGAGGATGCTGAGGAAAGTGATGATAGCGAGGATGATGAAATTAATGGCGAAGCTGATGTGAAAAGGTCGCGTAGTTCTGGCAAAGGCCGAGGTAAGGCATCTAAAACGTCCAGTGCCAAGGGAAAGGGCTCGGCTGCAAAGGGAAAAGGTGGTGGGCGAGGGCGCGGTGGGACTTCAGCTAATAAGAACAGTTCAAAATCCCCTCAGGTGAAATCTGGTAAGAGAGGAAGGCCCCGTAAGTCATAA | 1656 | 0.4825 | MSASEAEKKVEEEREEVKGGELLFCGATCWDIIGRRKGIVDGNLVSPSRLRPLVGVDIRFVASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSELSKYKILKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAALAGETVVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWVPRRVEIFQNRNLLPPDAIVSAGSVSSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLRLYYIPCGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPNGQKSSAVPKKVDILEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEVVNTTAAPKQAAKKGAKAAENSKKRKKSKDSSESEDEEEEDAEESDDSEDDEINGEADVKRSRSSGKGRGKASKTSSAKGKGSAAKGKGGGRGRGGTSANKNSSKSPQVKSGKRGRPRKS | 551 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g03464 | 551 | PANTHER | PROTEIN RCC2 | 7 | 520 | IPR028641 | - | |
| Vimu10g03464 | 551 | SUPERFAMILY | RCC1/BLIP-II | 19 | 408 | IPR009091 | - | |
| Vimu10g03464 | 551 | MobiDBLite | consensus disorder prediction | 527 | 541 | - | - | |
| Vimu10g03464 | 551 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 303 | IPR000408 | - | |
| Vimu10g03464 | 551 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 355 | 408 | IPR000408 | - | |
| Vimu10g03464 | 551 | MobiDBLite | consensus disorder prediction | 436 | 551 | - | - | |
| Vimu10g03464 | 551 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 115 | 125 | IPR000408 | - | |
| Vimu10g03464 | 551 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 395 | 405 | IPR000408 | - | |
| Vimu10g03464 | 551 | Gene3D | - | 211 | 414 | IPR009091 | - | |
| Vimu10g03464 | 551 | PRINTS | Chromosome condensation regulator RCC1 signature | 78 | 94 | IPR000408 | - | |
| Vimu10g03464 | 551 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Vimu10g03464 | 551 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 250 | IPR000408 | - | |
| Vimu10g03464 | 551 | PRINTS | Chromosome condensation regulator RCC1 signature | 250 | 264 | IPR000408 | - | |
| Vimu10g03464 | 551 | PRINTS | Chromosome condensation regulator RCC1 signature | 112 | 125 | IPR000408 | - | |
| Vimu10g03464 | 551 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 405 | IPR000408 | - | |
| Vimu10g03464 | 551 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 76 | 125 | IPR000408 | - | |
| Vimu10g03464 | 551 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 247 | 285 | IPR000408 | - | |
| Vimu10g03464 | 551 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 128 | 174 | IPR000408 | - | |
| Vimu10g03464 | 551 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 185 | 244 | IPR000408 | - | |
| Vimu10g03464 | 551 | Coils | Coil | 3 | 23 | - | - | |
| Vimu10g03464 | 551 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 179 | IPR000408 | - | |
| Vimu10g03464 | 551 | MobiDBLite | consensus disorder prediction | 465 | 484 | - | - | |
| Vimu10g03464 | 551 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Vimu10g03464 | 551 | Gene3D | - | 7 | 210 | IPR009091 | - | |
| Vimu10g03464 | 551 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 128 | IPR000408 | - | |
| Vimu10g03464 | 551 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 247 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g03464 | Vimu-Chr10 | 44416762 | 44422853 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g03464 | - | - | pvu:PHAVU_009G015100g | 895.19 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu10g03464 | 10 | 44416762 | 44422853 | Vimu10g03464 | 10 | 44416762 | 44422853 | ECH |