Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03460 ATGAGTAGAAGACCACCTCCTGATCCCGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTTTAAGCCGATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGAATTTGGGATACCCTTCAACATCGAACTTTGTCATCTGCATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCTTCTGTTTCTTCCCTCGGGACCAATAAATTTGCCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCAAGGATCCCATCACTTACAATCAAGACAAACAGTTACCACTTTTGTAAGTTTTCCGTGCTGAAGAATGATTCTGTTTGGTCAACAGAAGGGAAAGAATTAGAAGATTGCAACAGAAGAGAGCCAGGAGGAATGTCTGATGGTGAAATTCTGGAGGTTAAAAGGGACGAGACTTACACCAATCAAAGTTGTTCTACAAGCTTTGGAGAAAATACATATAGTGGAGGGCTACAATGTGTGGCTTTGTCAGGGGAGAACTCTTCAGAGGTCGAAATTTGGGATCTCAAGTCAGCTCAAAAAATTGTACAACTCCCTTCAAGCAATCCCAGTAACTCTTCAAGTGTTAGCAACAGAGGGATGTGCATGGCACTTCAATTGTTTTTATCATCGGAATCACAAGGATTTTTAAATGTCTTGGCTGGGTATAGTCTCAATCCTCTTTTCTTCCACCCTCCCTCTCTCAGACCTTGGTCTTGTTCCCCAAGTTCTGATACTGGCCATCCTCGTGAGATTGAATGGTCAATGTTTGTTCCTTTTCATCTCTTGGAGTCCCATCCTATACCCCAATGCAGATATGAAGATGGTTCCATGCTTTGGTGGGATATACGGAATCCTAAAGTTCCAGTAACTTCTGTAAAATTTCATTCTGAGCCAGTTCTGAGCATCTGTATTGACGGGTCTTGCAAAGGGGGTATCTCAGGAGCAGCGGATGACAAAATTATAATGTACAGCTTGGATCATTCTTCGGTAACACCCTTTTACTTTTATTTTCTTCTACTGAAACTTCTTGCTCATAAAAAGGACATCTCTCCTTATCTACCATCGTATGCCACTCCCATGAATACTTCGTTATGTTCTGAATCACTTCCTGGCCACAAAACATTTTACCCTCCAATGCGCACCTATTCCTCTCTTTCCATACACATCAGCTCTCTTCTCCATTTGAACTTCCAACTCCAGGTTCCTTCTTCCGAGGGTACTTGCGTAGTTAAGAAAGAAATCAGTTTGGATCGACCAGGCATATCAGGCATCTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATATAATTACCGCAAGGGAAATGCTTTAGCTATTTTGAAGTATCACCATGGCACATGCAACGCTGTAACTTATTCCTCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1536 0.4316 MSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGEVRIWDTLQHRTLSSAWLHSAAHGIVAVASVSSLGTNKFASQGRDGTVKVWEFDDAGLSRIPSLTIKTNSYHFCKFSVLKNDSVWSTEGKELEDCNRREPGGMSDGEILEVKRDETYTNQSCSTSFGENTYSGGLQCVALSGENSSEVEIWDLKSAQKIVQLPSSNPSNSSSVSNRGMCMALQLFLSSESQGFLNVLAGYSLNPLFFHPPSLRPWSCSPSSDTGHPREIEWSMFVPFHLLESHPIPQCRYEDGSMLWWDIRNPKVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIIMYSLDHSSVTPFYFYFLLLKLLAHKKDISPYLPSYATPMNTSLCSESLPGHKTFYPPMRTYSSLSIHISSLLHLNFQLQVPSSEGTCVVKKEISLDRPGISGISIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03460 511 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Vimu10g03460 511 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vimu10g03460 511 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vimu10g03460 511 Gene3D - 4 130 IPR015943 GO:0005515
Vimu10g03460 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vimu10g03460 511 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vimu10g03460 511 Pfam WD domain, G-beta repeat 470 504 IPR001680 GO:0005515
Vimu10g03460 511 Pfam WD domain, G-beta repeat 438 463 IPR001680 GO:0005515
Vimu10g03460 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 511 IPR001680 GO:0005515
Vimu10g03460 511 PANTHER TRANSDUCIN BETA-LIKE 3 4 506 - -
Vimu10g03460 511 Gene3D - 140 349 IPR015943 GO:0005515
Vimu10g03460 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 511 - -
Vimu10g03460 511 SMART WD40_4 424 463 IPR001680 GO:0005515
Vimu10g03460 511 SMART WD40_4 6 45 IPR001680 GO:0005515
Vimu10g03460 511 SMART WD40_4 466 505 IPR001680 GO:0005515
Vimu10g03460 511 SMART WD40_4 302 341 IPR001680 GO:0005515
Vimu10g03460 511 SMART WD40_4 51 91 IPR001680 GO:0005515
Vimu10g03460 511 ProSitePatterns Trp-Asp (WD) repeats signature. 492 506 IPR019775 -
Vimu10g03460 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vimu10g03460 511 Gene3D - 414 510 IPR015943 GO:0005515
Vimu10g03460 511 SUPERFAMILY WD40 repeat-like 5 506 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03460 10 131 Miscellaneous Gene Families AT5G08390 26.154 5.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03460 K24770 - gmx:100800482 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03460 10 44379672 44386579 Vimu10g03460 10 44379672 44386579 ECH