Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03450 ATGGGAGCTCTTGCTACATTAGCCCCTTGGATTCCCGAGGACGATCTTTTGCTCAAGAACGCCGTTGAGGCGGGTGCTTCACTAGAGTCACTTGCCAAAGGTGCAGTGCAATTTTCTCGAAAATATAGTATCAGAGAGATACAAGATAGGTGGTATTCTCTCCTCTATGATCCTGTCATTTCTGCAGAAGCTTCTGCGGGTATGACAAACTTTGAGCTTTCAGCTTCGCCTCTCCCATCGAAGTTTTACAGGTTTGGACATTCCAAGGAACAGAAAGTTGTTTCAGCTAAGAGAAAGTCTGGAAGTGTTCGCAATTTGTATTATGCAAGGTGCAAAAGAATTCGAAATAGCATGTTAACTTCCATGGACTTGAGTTTTCTAGTGGATCCGGGAAATGGTAATTATGCAGAGCATGAAAGTCACCCCTTATCTGTAACCTGCGTGCCTGAAGGTGGAACTTTAAATCTCCCTGTTCCGTATGATTTTCCTCCTGAAAATGTGATGGATGATAATGTGGTTTCTGATGGAGTTACTGCCAATGTGTTTTTCCCTGGAGTTGAAAGGGCAGTTGAAGAGAATTTTCCTGCCAAGCTAAATAATGTACTTAAGGAAGAACCTCATTTTATTGGAGACAACGTGCCTTTGGATGAAGCTGTTGAGGAGTTGGATGTTCCTGGAGAATTGACTATTGATGGGTGGATTGGTGACGATAATTTGGAGAGAATACCTTTGCCCACGTTAGATGACATCAACAATGGCCCTGGAAATATGTGTCCTGATTTTGATGAAAAAAGTGTATTCGATTCAACCGAGTTAGAGTGTGGAACTTCATTTAACTTAGCTTCACTTCCTGAAATACCAGTCTGGAGTACAGATGAGGGCATCAAAGAGTCTGATATGCCATGCGATGGTTTTAATGATTCGATTGCTTGTGGGGGCGCTTATTTGGAAGAACTGTCCAATTCTCTCCTCAACTTTAGTAGTGAGGAAGAGCTCTTTCTGATGGATGTTGATGGAGAAGAAGGGATTGACAAATCTTACTTGGATGGTCTGAGTTCGCTCCTACTAAATTCTACAAATGATGTTAATCCAAGTCAAGTCCCTAAAAAGGATGAAGCAGAGCTGCAAGTCCCTAAAACAGATGGAACAGAGTCGTTAATGGCCTCACAGGCACATGTTCTAAATCATTCAGTTTCATGTTACAAAGAGTTAGAAGACAACCCAGGGTCAACCTCTAGTGGTGTACAAGTAGTTCACAAATCAGAGTTCCAAATGTCATCTCCTCCCTTGGCTGAAGGTCCCCTCTTTCATGAACTAACTAACGAAGTTCCTTCCTGTTCCCTAAACACTGAGGAACAAGAAATTCCAGATAATGAAGACGTTTTCCTACCATTTGACGTGCCTCCTGTCATATTTCCCCCTTCATCTAAACTGATTTTTAAAGCATCCAAGAAACCAATTTCGTCATCTGTTCAGGATTATGGATTTAATAGGCATAGAGCTAATGAAAGAGGCAAATCTTTGATGCATCCAGAGAAGAAAATCCGTGTAGAATCTCAATCATCTTCTCAGATGATGGGATCTCCTTGCTTCCTGGTACCTGATGGTGGTTCTAAGGTAAAATGCGAGTTGCCTGCTAATCATGCATCACACATAGTATCTACCAGTTCTGTTACTGTTTCTGGTGGCTTAGGTGCAAATGGCGCTGCAAACACTACAAATGCTCCTCTTCATGCAAATAAAAAGGAAGAAGCTACCAATGCTGACTTGGCAAAGGATCAATGCAATCATATGGCAAATCCTTTCATTAAGAAATCAGCAGGTAGTTCGAATGACTTACGAAATAATCCCCAATTTCATGGTTCTAGCATGAAGAATGAACAAGATTTAGGTTTGTCACTTCAAGATCACCAGTTGAAATGTGCTGAAGTTGGATCCTCAGATGTTGTTGACTCGGAGCTGGTGGCAGACCCTCTAACACTAGATGAGGAAGAGCATGATATAGACAGCGACGATGAGCTTCCTTCTTATTCTGACGTAGAAGCAATGGTACTTGATATGGACTTGGATCCTGATGATCATCAGGATTCTTGTTATATTGAGGAAGTATCAAGATATCAACATGTGGAAAGTAAGCGAGCTGTCATGAGGCTGGAACAGGGTGCCCATTCTTGTATTCAGAGAGCCATTAATGCACATGGAGCATTTGCCATCTTATATGGTCGACACTCAAAGCATTATATTAAGAAACCCGAGGTTCTACTTGGTCGAGCGACGGAAGGTTTTCCTGTGGACATTGACTTGAGCAAAGGAGGGTATAGCAATTCAATATCTCGACGTCAGGCAATTATAAAGATGGATAAAGAGGGGTCATTCTACATAAAAAACTTCGGCAAGAGTTCAATCCTGGTAAATAGCAAAGAAGTGCACACTGCTGAGTTCTCACCTCCTGGTATTCCTTGTGCACTCGGGATTGAATTATGTTCCAAAGCAAAATTATTATTCCTACATATCATATTCAGTCCCCCCATCCTCGTGGTATCGGTGAGGGGCATACCTTTGATATTTGAGATAAATCAAAATCGTGTGAAGCGGTACCTGGATCACATTTCTGACAATTCACAAACCTTTTAG 2634 0.4176 MGALATLAPWIPEDDLLLKNAVEAGASLESLAKGAVQFSRKYSIREIQDRWYSLLYDPVISAEASAGMTNFELSASPLPSKFYRFGHSKEQKVVSAKRKSGSVRNLYYARCKRIRNSMLTSMDLSFLVDPGNGNYAEHESHPLSVTCVPEGGTLNLPVPYDFPPENVMDDNVVSDGVTANVFFPGVERAVEENFPAKLNNVLKEEPHFIGDNVPLDEAVEELDVPGELTIDGWIGDDNLERIPLPTLDDINNGPGNMCPDFDEKSVFDSTELECGTSFNLASLPEIPVWSTDEGIKESDMPCDGFNDSIACGGAYLEELSNSLLNFSSEEELFLMDVDGEEGIDKSYLDGLSSLLLNSTNDVNPSQVPKKDEAELQVPKTDGTESLMASQAHVLNHSVSCYKELEDNPGSTSSGVQVVHKSEFQMSSPPLAEGPLFHELTNEVPSCSLNTEEQEIPDNEDVFLPFDVPPVIFPPSSKLIFKASKKPISSSVQDYGFNRHRANERGKSLMHPEKKIRVESQSSSQMMGSPCFLVPDGGSKVKCELPANHASHIVSTSSVTVSGGLGANGAANTTNAPLHANKKEEATNADLAKDQCNHMANPFIKKSAGSSNDLRNNPQFHGSSMKNEQDLGLSLQDHQLKCAEVGSSDVVDSELVADPLTLDEEEHDIDSDDELPSYSDVEAMVLDMDLDPDDHQDSCYIEEVSRYQHVESKRAVMRLEQGAHSCIQRAINAHGAFAILYGRHSKHYIKKPEVLLGRATEGFPVDIDLSKGGYSNSISRRQAIIKMDKEGSFYIKNFGKSSILVNSKEVHTAEFSPPGIPCALGIELCSKAKLLFLHIIFSPPILVVSVRGIPLIFEINQNRVKRYLDHISDNSQTF 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03450 877 SUPERFAMILY SMAD/FHA domain 728 809 IPR008984 GO:0005515
Vimu10g03450 877 PANTHER MICROSPHERULE PROTEIN 1 7 875 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vimu10g03450 877 Pfam FHA domain 754 811 IPR000253 GO:0005515
Vimu10g03450 877 ProSiteProfiles Forkhead-associated (FHA) domain profile. 753 809 IPR000253 GO:0005515
Vimu10g03450 877 SMART FHA_2 752 809 IPR000253 GO:0005515
Vimu10g03450 877 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03450 Vimu-Chr10 44310095 44315832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03450 - - gmx:100786493 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03450 10 44310095 44315832 Vimu10g03450 10 44310095 44315832 ECH