Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03443 ATGGATGAAGAGAATGGTTACAGTGGGAGTAGCAGCTCCAATTTGGAGACTTTGAAGGCGGAGAGATCTGTGTGGTTGATGAAATGCCCTTTGGTGGTGGCTAAGTCATGGCAGACTCATCCTCCTTCTCAACCTCTCGCTAAGGTCGTCCTCTCCCTCGATCCTCTCCATCCTGAAGAAGATCCCTCTGCAGTTCAGTTTACAATGGAGATGGCTGGCTCTGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAGGACTTTGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAGGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGTAAATTGTGCCGTGAGAGGACAAACAGATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGATCGCGGAGTTCTAATGAGGCCAATGCCGGGAATGATTGGTCTAGTTTCATCCAATTCCAAGGACAAGAAAAAGACGCAGCCAATTAAACAATCTGATACCAAGAGAACAAGAAGAGATAGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCCTGAAACAACTTGTCCAAGAGACTGATCAACCCGCCCAATTCTTGAAAGAGATTCTGAACGAACTGTGTGTTTATAATAAAAGAGGTGCCAATCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATATAAATGCTGAATGA 786 0.4262 MDEENGYSGSSSSNLETLKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEEDPSAVQFTMEMAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNRSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPIKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDINAE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03443 261 MobiDBLite consensus disorder prediction 166 191 - -
Vimu10g03443 261 Pfam TFIIF, beta subunit HTH domain 189 252 IPR040450 -
Vimu10g03443 261 CDD TFIIF_beta 14 120 - -
Vimu10g03443 261 SUPERFAMILY Rap30/74 interaction domains 12 121 IPR011039 GO:0006367
Vimu10g03443 261 Pfam TFIIF, beta subunit N-terminus 21 137 IPR040504 -
Vimu10g03443 261 FunFam General transcription factor IIF subunit 2 187 254 - -
Vimu10g03443 261 Gene3D - 187 254 IPR036388 -
Vimu10g03443 261 MobiDBLite consensus disorder prediction 174 191 - -
Vimu10g03443 261 SUPERFAMILY "Winged helix" DNA-binding domain 187 253 IPR036390 -
Vimu10g03443 261 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 8 253 IPR003196 GO:0005674|GO:0006366|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03443 Vimu-Chr10 44249300 44254982 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03443 K03139 - gmx:100788473 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03443 10 44249300 44254982 Vimu10g03443 10 44249300 44254982 ECH