Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03440 ATGCTTATTGAAGTCTCGACTAAAGTGGAGACCCTCGCTATAAATGATAATGACATCCACAGTATTGTTCTGTCATATCTTATACACAATTGCTACAAAGAATCGGTAGAATCATTCATTACTAGCACTGGGACAAAGCAGCCTGCAGATTATTTGGAGGACATGGACAAAAGGAAAAAAATCTTTCACTTTGCACTCGAGGGAAATGCACTCAAGGCCATTGAGCTTACTGAGCAGCTAGCACAGGATATTTTAGAGAAGAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTTTGCTCCAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGCTGGGCCCTTTTGGAAAGGAGCCCAAATATATGGAAAAACTTGAAGATTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAGCAGGTTGCAGATAGTTTGAATCGGGCTATTCTTGCACACTTGAATCTTCCCAGATACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTTAGACAATGCTTAAATCAAGAAGCGGGCAAGTTCTGTCTAACCTGCAAAATCTTGGATTGCTCATCTCTTCTTGGACCAGTAAAAGGAGATGTAGCCAGCTACTATAGTATGCAATATTGGTGTTCGAGCTGA 708 0.4153 MLIEVSTKVETLAINDNDIHSIVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKKIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPRYTAMERLIQQATVVRQCLNQEAGKFCLTCKILDCSSLLGPVKGDVASYYSMQYWCSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03440 235 PANTHER RAN BINDING PROTEIN 9-RELATED 10 202 - -
Vimu10g03440 235 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Vimu10g03440 235 SMART Lish 15 47 IPR006594 GO:0005515
Vimu10g03440 235 Pfam CTLH/CRA C-terminal to LisH motif domain 55 192 IPR024964 -
Vimu10g03440 235 SMART toby_final6 107 202 IPR013144 -
Vimu10g03440 235 SMART ctlh 54 111 IPR006595 -
Vimu10g03440 235 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 54 111 IPR006595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03440 K23338 - gmx:100801338 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03440 10 44198504 44200887 Vimu10g03440 10 44198504 44200887 ECH