Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03344 ATGAGGTTCGTTAATTCGGTGTTCAAAGTGTTGAAATATCCAAAAATGGGGACTCTAAAATTAGCGTCACGGCGAGCTTCATTTCTTTCCAGATTCGAAATAACAATGGACCTGCGTGAATCGATCAGCAACCAAACCGATGTTGCCCTGAGCATGACAAAACTGTTGGTATCGAAGGAAGCTCGGGACAAGAACTTCGTGTATTCGCCGCTGTCGTTGCACGTTGTTCTCAGCATCATCGCTGCTGGCTCCAAGGGTCCCACACTCGATCAGCTTCTCTCCTTCCTCCGATCCAAGTCCACCGACCATCTCAACTCCTTCGCCTCTCAGCTCGTCACCGTCGTACTCTCCGATGCCTATCCCGCCGGAGGGCCTCGACTCTCCTTCGCCGACGGCGTCTGGGTTGAGCAAACCCTTCCTCTTCTTCCTTCCTTCAAACAGCTTGTCAACACTGATTACAGGGCAACTTTGGCTTCGGTTGATTTCCAGACCAAGGCTGTTGAAGTGGCCAATGAAGTTAATTCTTGGGCCGAAAAGGAGACAAACGGCCTTGTAAAAGAACTTCTTCCTGCTGGATCTGTTGACAGTGAAACCAGACTCATCTTTGCAAATGCACTGTACTTCAAAGGAGCGTGGAATGAGAAGTTTGATGCTTCAATTACAAAAGACCATGATTTCCACCTTCTTGATGGCAATTCAGTCAAGGTTCCCTTCATGACTAGCGAGGAGAAGCAGTTCATAAGGCCTTTTGAGGGTTTTAAAGTCCTTGGTCTTCCCTACAAGCAAGGCGAAGATAAACGCCAATTCACCATGTACATTTTCCTTCCAGATGCAAAAGATGGGCTGCCAGCTTTGGTTGAGAAGTTGGCTTCTGAATCTGGGTTCTTGGAACGCAAGTTTCCTAATTACCAATTGGATGTAGGGGATTTCAGGATCCCAAGATTCAAAATTTCTTTTGGGTTTGAAGCCTCTGATGTGCTGAAGGAACTTGGAGTGGTTTTACCTTTCACTGTTGGAGGTTTGACAGAAATGGTGGAGTCTCCTGTGGGTCAAAAGCTGTGGGTTTCTGATATATTTCACAAGTCTTTTATTGAAGTAAACGAAGAAGGTACTGAAGCTGCAGCGGCTACTGCTGCAACTATACTGTTGAGGAGTGCTCTGTCTCCGTCTAAAATAGACTTCGTAGCTGACCACCCTTTCTTGTTCCTCATCAGAGAAGATTTAACTGGAACAGTACTCTTTATTGGCCAGGTGCTCGATCCTCGTGCTTGA 1272 0.4662 MRFVNSVFKVLKYPKMGTLKLASRRASFLSRFEITMDLRESISNQTDVALSMTKLLVSKEARDKNFVYSPLSLHVVLSIIAAGSKGPTLDQLLSFLRSKSTDHLNSFASQLVTVVLSDAYPAGGPRLSFADGVWVEQTLPLLPSFKQLVNTDYRATLASVDFQTKAVEVANEVNSWAEKETNGLVKELLPAGSVDSETRLIFANALYFKGAWNEKFDASITKDHDFHLLDGNSVKVPFMTSEEKQFIRPFEGFKVLGLPYKQGEDKRQFTMYIFLPDAKDGLPALVEKLASESGFLERKFPNYQLDVGDFRIPRFKISFGFEASDVLKELGVVLPFTVGGLTEMVESPVGQKLWVSDIFHKSFIEVNEEGTEAAAATAATILLRSALSPSKIDFVADHPFLFLIREDLTGTVLFIGQVLDPRA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03344 423 SMART serpin2 50 421 IPR023796 -
Vimu10g03344 423 Gene3D Antithrombin, subunit I, domain 2 63 368 IPR042178 -
Vimu10g03344 423 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 43 421 IPR000215 GO:0004867|GO:0005615
Vimu10g03344 423 FunFam Predicted protein 63 246 - -
Vimu10g03344 423 Gene3D - 212 416 IPR042185 -
Vimu10g03344 423 Pfam Serpin (serine protease inhibitor) 44 421 IPR023796 -
Vimu10g03344 423 ProSitePatterns Serpins signature. 394 404 IPR023795 -
Vimu10g03344 423 SUPERFAMILY Serpins 30 421 IPR036186 -
Vimu10g03344 423 CDD serpinP_plants 43 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03344 Vimu-Chr10 43547195 43549571 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03344 K13963 - vra:111242705 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03344 10 43547195 43549571 Vimu10g03344 10 43547195 43549571 ECH