LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03310	ATGGAGGATGTTGAAGACAAGATACCCCCTGTATTCTCTTCAAAAATTACTGAAGAGACACCACTTGCAGAACATGTTGGAGACAAACTACCGTCTGAATCTTCTCCAAAAATTGCTAAAGAGACTTCACTACTGGCAGAACTTGTTGGAAACAAGACACCATCTGAATCTTCTCCAAAAACTGCCGAAGAGATACTCCTGGCTGAGCTTGTTGGAGACAAGCTACCATTGGAAACTTCCCCAAATATTTCTGAAGAACCACTGGTAGAACTTGTTGGAGACAACCAACCGTCTGCATCCTCTTCCAAAATTAATGATACACCACCTGCTGAGTATGTGATAGAGAACTCTGAATCCTCTTCTAAAGTTGCAGAAGAGGCGACACTGGCAGAACATGTTGTCAACAAGCTACCCTCTGAATCCACTACAAAATTTTCTGAAGAGATGACACTGGTAGAACACCCTGAAGAAAACACCGAAGTGATAAAATTACCCAACAATCAATCTTCCACCGAAGCTCCAACTGTCCCACTTAGTAATGCAAAATTGGAGTCTGACACTCATTTACCACTGGATGGGTTCCCTGAACAAATATTTTTTCCAAATTCTAATGATTTTCTAACTGTAATGCAAGAGGAGAGTGTTTCTTTAGTTAATTCAGTTGCAAACCCAGATGCTGCATTTGATGTAACAGAAAAAAGGCAGCAGGTCACTTCAGTTGAAGAATCAAAACCAGGTGCTCTAGAAAATGTTTCTGACGGGCATGCATTGCTGGATAATGTTTCTAATATCACTGCTGACAGTGATGTTAATGATGAGATTAGGCGTTCAGCTTCCTCTTCTGAAGCAAAAGATTTGCCAAATGATCACAATGAACTTTTAATGACCATGGGAACGGTTGGTTCACTCCCCCATGGCAAGACGTTTGATGAGAAAAAACACATTATCGATACCAGAGCTCCTATTAAATCTGTCAAGCAAGCTGTTTCAAAGTTTGGAGGAATTGTGGATTGGAAGGCTCATAGAATCCAGACTGTGGAGAGACGTGATCTTGTAGAACATGAGCTTGAAAAGGCACAAGAGGAGATCCCAGAGTACAGAAAACAAGCAGAGGATGCTGAACAGGAAAAAGGCCAAATGCTTAAGGAGTTAGACAGTACAAAGAGATTAATAGAAGAATTAAAACTTAACCTAGAGAGAGCAGAAACAGAAGAGCGTCAAGCAAGACAGGACTCAGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAGGGTATTGCAGACGAATCTAGTGTTGCAGCCAAGGCACAACTTGAGGTTGCCAAAGCAAGGTATGCAGCTGCTGTTTCAGATTTAAAAGCTGTGAAAGAGGAGCAGGAAACATTGCAGAAAAATTTTTCTATCTTAGTGAGTGAAAGAGACTTAGCTATTAAGAAAGCTGAAGAGGCCGTTGCTGAATCAAAGGAAGTAGAGAAGTCTGTAGAGGATTTAACTATTGAGCTAATTGCTGCAAAAGAATCATTGGAGACTGCCCACGGTGCACACTTGGAAGCGGAGGAACAAAGAATAGGAACAGTCATGGCAAGAGATCAAGATTCCCTTGATTGGGAGAAGGAACTTAAAGAGACAGAAGAAGAGCTCCAGAGACTCAACCAGCAAATTTTGTCTGCAAAGGAACTCAAATCTAAATTGGATACAGCCTCTACTTTACTGATTGATTTGAAAGCTGAATTATCTTCTTATATGGAATCAAAGTTAAAGCAGGAAGGTGACGAAGAAGGAAACTCAAAAGGAGGCCCAGAAGAACCAGAGAAAAAGACCCACACTGACATACAAACAGCAGTTGCATCAGCCAAAAAGGAACTTGAGGAAGTGAATCTTAACATAGAGAAAGCAACCGCAGAGGTTAGTTGCTTGAAGGTAGCTGCTACATCATTAAAATCAGAACTTGAACAGGAAAAAGCAACTCTTGCCACCATCAGACAAAGGGAGGGAATGGCCTCCATTGCGGTTGCATCTCTGGAAGCTGAATTGGAAAAGACCAGATCAGAAATTGCTTTGGTCCAGATGAAGGAGAAAGAAGCTAAAGAGAAAATGACCGAGCTTCCCAAGAAGCTACAAATTGCGGCTGAAGAGAGTAGTCAAGCCAACTTGCTTGCTCAGGCAGCTCGTGAAGAGCTACAAAAGGTAAAGGCAGAAGCAGAGCAGGCCAAGGCTGGAGTAAGTACCTTGGAAAGTAGATTACTTGCAGCTCAGAAGGAGATAGAGGCTGCAAGGGCGTCTGAACATTTGGCAATAGCGGCAATTAAAGCATTGCAAGAGAGTGAATCAACTAGAAGCAAGAATGCTTTGGACCCATCCAAAGGAGTAACACTTTCTTTGGAAGAGTACTACGAGCTTAGCAAACGAGCACACGAGGCAGAAGAGCGGGCCAATATGAGGGTTGCAACTGCTAATTCTGAAATTGATAAAGCTAAGCAGTCTGAATTGAAAGCCTTTGAAAAGTTGGACGAAGTTAATAGGGAGATAGCTGCAGGAAGGGAATCTTTGAAAGTGGCGATGGAAAAGGCTGAAAAGGCTAAGGAAGGTAAATTGGGCGTAGAGCAAGAATTAAGAAAGTGGAGAGCTGAAAGTGAACAACGAAGAAAGGCGGGAGACTCTGGCCAAGGAGCGGTAAACCAGAGTAAAAGTCCTAGGGGTAGTTTTGAGGGGAGTCATGAAGCAAATAATTTTGAGCGCACTGGTGTTGCAACTAATGCTGAACATCATTTTCCAAGTCCGAAGGCTAATGTACATCCAGACTTTGATGAAAGTGGATCATCCCCAGAAACAAAACAAGGGAAAAAGAAGAAAAGGTCACTTTTCCCGAGGGTTTTGATGTTCTTTGCTAGAAGAAAAACACATTCAACCAAGGTTGGTATATGGTCGCCTGCTGAGTGCTTTTGTAAAGATTTGTTTGAGATTTTACCAAATGAAAGAAAAAGGTTTCCGAGTCTGAGACTTATTGGAAACACCTCATTAGATTGGAACAGGGAAGATACCTGGAATGTTGCAGATCTTCTGATGCCTGGAATATACCGTATATAG	3087	0.4214	MEDVEDKIPPVFSSKITEETPLAEHVGDKLPSESSPKIAKETSLLAELVGNKTPSESSPKTAEEILLAELVGDKLPLETSPNISEEPLVELVGDNQPSASSSKINDTPPAEYVIENSESSSKVAEEATLAEHVVNKLPSESTTKFSEEMTLVEHPEENTEVIKLPNNQSSTEAPTVPLSNAKLESDTHLPLDGFPEQIFFPNSNDFLTVMQEESVSLVNSVANPDAAFDVTEKRQQVTSVEESKPGALENVSDGHALLDNVSNITADSDVNDEIRRSASSSEAKDLPNDHNELLMTMGTVGSLPHGKTFDEKKHIIDTRAPIKSVKQAVSKFGGIVDWKAHRIQTVERRDLVEHELEKAQEEIPEYRKQAEDAEQEKGQMLKELDSTKRLIEELKLNLERAETEERQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYAAAVSDLKAVKEEQETLQKNFSILVSERDLAIKKAEEAVAESKEVEKSVEDLTIELIAAKESLETAHGAHLEAEEQRIGTVMARDQDSLDWEKELKETEEELQRLNQQILSAKELKSKLDTASTLLIDLKAELSSYMESKLKQEGDEEGNSKGGPEEPEKKTHTDIQTAVASAKKELEEVNLNIEKATAEVSCLKVAATSLKSELEQEKATLATIRQREGMASIAVASLEAELEKTRSEIALVQMKEKEAKEKMTELPKKLQIAAEESSQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAARASEHLAIAAIKALQESESTRSKNALDPSKGVTLSLEEYYELSKRAHEAEERANMRVATANSEIDKAKQSELKAFEKLDEVNREIAAGRESLKVAMEKAEKAKEGKLGVEQELRKWRAESEQRRKAGDSGQGAVNQSKSPRGSFEGSHEANNFERTGVATNAEHHFPSPKANVHPDFDESGSSPETKQGKKKKRSLFPRVLMFFARRKTHSTKVGIWSPAECFCKDLFEILPNERKRFPSLRLIGNTSLDWNREDTWNVADLLMPGIYRI	1028

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	1	37	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	585	609	-	-
	Vimu10g03310	1028	Coils	Coil	438	465	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	21	35	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	854	907	-	-
	Vimu10g03310	1028	Pfam	Weak chloroplast movement under blue light	313	881	IPR008545	-
	Vimu10g03310	1028	Coils	Coil	671	698	-	-
	Vimu10g03310	1028	PANTHER	HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED	314	964	-	-
	Vimu10g03310	1028	Coils	Coil	808	828	-	-
	Vimu10g03310	1028	Coils	Coil	713	761	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	887	907	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	585	617	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	854	884	-	-
	Vimu10g03310	1028	Coils	Coil	615	663	-	-
	Vimu10g03310	1028	Coils	Coil	533	577	-	-
	Vimu10g03310	1028	Coils	Coil	477	500	-	-
	Vimu10g03310	1028	Coils	Coil	342	420	-	-
	Vimu10g03310	1028	MobiDBLite	consensus disorder prediction	921	951	-	-
	Vimu10g03310	1028	Coils	Coil	836	877	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03310	Vimu-Chr10	43299853	43304151	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03310	-		-	pvu:PHAVU_009G064800g	1531.54

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03310	10	43299853	43304151	Vimu10g03310	10	43299853	43304151	ECH