Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03308 ATGATGAACCTTACGTCAGCTAATGCTGTTCCCGAAACAGTCCATTGTTATATTGTCAAATGTGGCTTTACCAGTGACGCTTCTGTTGTAACCTCCCTGGTTTGTCTATATGCAAAGCAAGGGCTCACAGATATGGCAAAATTGCTTTACAAGCGTTATCCCACAAAGGACCTGATTTCGTTAACTGCGATAATCTCTAGCTATTCGGAAAAAGGTGATGTAGAGTCTGCGGTGGAGTGTTTTACCCAAACTCTGCTACTAGGCATTAGACCAGATGCAGTTGCATTAATTGGTGTCCTGCATGGAATCACTAATCCGTCTCATTTTTCCATTGGATGTGCTTTCCATGGTTATGGGTTGAAGAACGGGCTGACTAATGATTGCTTGGTTGCAAATGGGCTAATAAGCATGTATTCAAGATTTGATGAGATAGAAGCTGCATTATCTTTGTTTTTTGACAGGAGCGAAAAACCACTGGTCACTTGGAATTCTGTGATATCTGGTTGCGTTCAGGCTGCAAAATCAAGTGAAGCTATGGAGTTATTCTGCCAATTGAGCACATGTGGACAAAAACCAGATGCCATCACTATCGCTAGTCTACTTTCAGGATGTTGCCAGCTTGGGTACCTGCGGATTGGAGAGACACTGCATGCATATATTCTTAGAAACAATGTGAAAGTGGAAGATTTTACAGGAACTGCTCTTATAGATATGTATTCTAAGTGTGGAAGATTAGAATATGCTGAAAAGGTATTTTATAGCATCAACGGTCCGTGTTTAGCAACATGGAACTCCATCATATCGGGTTATAGTTTATATGGACACGAACACAAAGCTTTCAGTTGTTTTTCCAAACTACTTGAACAAGGGCTAGCACCAGATAAAATCACCTTCTTGGGAGTTTTAGCAGCATGTACCCATGGCGGACTTGTCTACGAAGGAATTCAATACTTCCGTAGCATGACAGAAGAGTATGGTTTGAGACCAACTTTGCAGCATTACGCATGCATAGTTGGTCTCCTGGGTCGGGCAGGGTTGTTCAAAGAAGCAATGGAGGTTATTAACAACATGGAAACTCGGCCTGATTCTGCTGTCTGGGGAGTATTGTTAAGTGCTTGTTGCATTCAACATGAAGTAAAGCTTGGGGAATGCTTGGCGAAAAATTTGTTTTTATTAAATTACCAAAACGGTGGATTTTATGTTTTAATGTCGAATCTTTATGCCATTGTTGGGAGGTGGGATGACGTAGCAAGGGATCATCACCATCTTCTTCGTATCCCCAAGTTACAATTCGGATCTCATCTCATAGAAATAAAGTCCATGGGATCCTCTCACAGCCGCGAAGATCTGTTAGATTCATCCGATTCGGAGCAGGAGGAGGAGGAAACCTACCAAGACGCCCATGGAGGAAGCTCCGAACGGCCACCAAAAACGCTGTCAACTTCATCCCTTGATGACGTGGAGGCCAAGCTCAAAGCCCTCAAACTCAAATATTCCTCCTCCAGCACCCCCGCTGTTAAAAACGCCGTCAAACTCTACCTCCACGTCGGCGGCAACACCCCCAAAGCCAAGTGGGTAATCTCCGACAAACTCACCACGTATTCTTTCGTCAAAACTCACTCCAACGCCGACACCGACGACGAAAACGACGATACGGACGACGACGAAAGCAGCAGAGAACAACCGTTCTGGGTTATGAAAGTCGGTTCCAAAATCCGGGCAAAGGTGGGCCCCGAGATTGGCCTCAAGAGTTTCCCCGACCAGCGGCGTGTGGACTTCGTGGCGCGCGGCGTCTGGGCGATGAAGTTCTTCACCGTGCAAGACCAAATCGACTTCATTGATTCCTTCCAGAACTGTCTTTTCGAGAACACGCACGGGGTCGAGGCGACGGAAGCAAATAAGCTCAAGATCTACGGCAAGGATTTCATGGTGTGGGCCAAACCCGAGGCCGCGGACGATACTATGTGGGAAGACGCAGAAGAAACTTTCTCCAAAAGCTCCACTCCGGTTAGGGCAAATCAGGATTTGAAAGAAGAGTTCGAAGAAGCTTCAAACGGCGGCATTCAGAGCATTGCATTGGGTGCTTTAGATAACAGTTTTTTGGTGAGTGATAACGGGATTCAGGTTGTGAAGAACTTCGCACATGGGATTCACGGGAAGGGTGCGTTCGTGAATTTCAGTGATGGGTATAAAAATGGGGGTGGGGATTCGTCTTCTTATTCTACCCCTAAGAAGACGCTTCTTATGAAGGCTGAGACGAACATGCTTCTGATGAGTCCAATGGGTGGCGGAAAGCTTCACTCCACGGGGCTTCATCAGCTTGATATTGAGACCGGGAAGGTGGTTAGTGAATGGATGTTTGGGAAGGACGGTACAGAGATTACAATGAGGGATATTACCAATGATTGTAAAGGAGCACAGTTGGATCCCTCTGGGTCAACATTTCTGGGGTTGGATGATAACAGACTTTGTAGGTGGGATATGAGGGATCGCAATGGGATGGTTCAGAACTTGGCTGATTCGAATGCCCCTGTATTGAATTGGGCTCAGGGACATCAGTTTTCGAGGGGGACTAATTTTCAGTGCTTTGCCACTACCGGTGATGGGTCCATTGTTGTAGGGTCTTTGGATGGAAAGATAAGACTGTATTCGGTGAACACAATGAGGCAAGCGAAGACTGCGTTTCCTGGCCTTGGATCTCCTGTCACTCATGTGGATGTTACCTTCGATGGCAAGTGGATCGTGGGTACTACTGATACATACTTGATTCTTATTTGTACCCTCTTTACTGACAAAGATGGAAGGACAAAGACTGGTTTTTCTGGGAGGATGGGGAACAAGATTGCTGCGCCCAGGTTGTTGAAGCTCACCCCTCTTGATTCCCATTTGGCTGGAGCGAATAACAAGTTCCGGAATGCACAGTTTTCGTGGGTGACAGAAAATGGGAAGCAGGAGCGGCACATAGTAGCCACTGTGGGGAAGTTTAGTGTGATATGGAACTTCCAGCAAGTCAAGGATGGTTCGCATGAGTGCTATCGTAACCAGCAGGGTCTTAAGAGCTGCTACTGCTACAAGATAGTCCTTAGGGACGATTCCATTGTTGAGAGCCGTTTTATGCATGACAGATTTGCAGTCAGCGATTCTCCTGAAGCGCCACTAGTCATAGCAACACCAATGAAAGTTAGCTCTTTCAGCATATCTGGCAAGCGATGA 3213 0.4619 MMNLTSANAVPETVHCYIVKCGFTSDASVVTSLVCLYAKQGLTDMAKLLYKRYPTKDLISLTAIISSYSEKGDVESAVECFTQTLLLGIRPDAVALIGVLHGITNPSHFSIGCAFHGYGLKNGLTNDCLVANGLISMYSRFDEIEAALSLFFDRSEKPLVTWNSVISGCVQAAKSSEAMELFCQLSTCGQKPDAITIASLLSGCCQLGYLRIGETLHAYILRNNVKVEDFTGTALIDMYSKCGRLEYAEKVFYSINGPCLATWNSIISGYSLYGHEHKAFSCFSKLLEQGLAPDKITFLGVLAACTHGGLVYEGIQYFRSMTEEYGLRPTLQHYACIVGLLGRAGLFKEAMEVINNMETRPDSAVWGVLLSACCIQHEVKLGECLAKNLFLLNYQNGGFYVLMSNLYAIVGRWDDVARDHHHLLRIPKLQFGSHLIEIKSMGSSHSREDLLDSSDSEQEEEETYQDAHGGSSERPPKTLSTSSLDDVEAKLKALKLKYSSSSTPAVKNAVKLYLHVGGNTPKAKWVISDKLTTYSFVKTHSNADTDDENDDTDDDESSREQPFWVMKVGSKIRAKVGPEIGLKSFPDQRRVDFVARGVWAMKFFTVQDQIDFIDSFQNCLFENTHGVEATEANKLKIYGKDFMVWAKPEAADDTMWEDAEETFSKSSTPVRANQDLKEEFEEASNGGIQSIALGALDNSFLVSDNGIQVVKNFAHGIHGKGAFVNFSDGYKNGGGDSSSYSTPKKTLLMKAETNMLLMSPMGGGKLHSTGLHQLDIETGKVVSEWMFGKDGTEITMRDITNDCKGAQLDPSGSTFLGLDDNRLCRWDMRDRNGMVQNLADSNAPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSVNTMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDTYLILICTLFTDKDGRTKTGFSGRMGNKIAAPRLLKLTPLDSHLAGANNKFRNAQFSWVTENGKQERHIVATVGKFSVIWNFQQVKDGSHECYRNQQGLKSCYCYKIVLRDDSIVESRFMHDRFAVSDSPEAPLVIATPMKVSSFSISGKR 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03308 1070 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Vimu10g03308 1070 SUPERFAMILY Putative isomerase YbhE 741 968 - -
Vimu10g03308 1070 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Vimu10g03308 1070 Gene3D Tetratricopeptide repeat domain 12 109 IPR011990 GO:0005515
Vimu10g03308 1070 Gene3D Tetratricopeptide repeat domain 114 212 IPR011990 GO:0005515
Vimu10g03308 1070 FunFam Vacuolar import/degradation Vid27-related protein 753 1042 - -
Vimu10g03308 1070 Pfam PPR repeat family 160 206 IPR002885 -
Vimu10g03308 1070 NCBIfam pentatricopeptide repeat 262 294 IPR002885 -
Vimu10g03308 1070 NCBIfam pentatricopeptide repeat 160 194 IPR002885 -
Vimu10g03308 1070 Pfam PPR repeat 335 359 IPR002885 -
Vimu10g03308 1070 Pfam PPR repeat 60 82 IPR002885 -
Vimu10g03308 1070 Pfam PPR repeat 233 253 IPR002885 -
Vimu10g03308 1070 Pfam PPR repeat 262 291 IPR002885 -
Vimu10g03308 1070 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Vimu10g03308 1070 Pfam VID27 C-terminal WD40-like domain 696 1013 IPR013863 -
Vimu10g03308 1070 Gene3D - 674 994 IPR015943 GO:0005515
Vimu10g03308 1070 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 440 1068 IPR040458 -
Vimu10g03308 1070 MobiDBLite consensus disorder prediction 541 560 - -
Vimu10g03308 1070 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 10 108 - -
Vimu10g03308 1070 MobiDBLite consensus disorder prediction 442 483 - -
Vimu10g03308 1070 Pfam E motif 378 418 IPR046848 -
Vimu10g03308 1070 Gene3D Tetratricopeptide repeat domain 213 419 IPR011990 GO:0005515
Vimu10g03308 1070 FunFam Pentatricopeptide repeat-containing protein 109 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03308 Vimu-Chr10 43290864 43296612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03308 441 1070 Acyl Lipid Metabolism Gene Families AT3G19240 64.209 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03308 - - gmx:100810233 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03308 10 43290864 43296612 Vimu10g03308 10 43290864 43296612 ECH