Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03281 ATGAGGCAGTGGATACACGTCGCGGTGGCCGCAGCCGCCGTGGGATGCGTCTCCACCCTTATGTTGGTCTTTCTCTTCCGTTGGTGTCGCAAAAGAAATGGTAGGAATTTCGTTGAACCGACTAGTTTGACCAGGGTTGAGAGTGTGCAGGGAGGGATTTCAGTTTCCAGGATCCATCAGCAACCTTTCCAGTTGGATCAGGGGAGCAAGAACAGCAACAAAGGTAATTACAATTACTATGTTTTTCGCGGCGGTGGGGTGTCGGGGAAAAGAAGCGTCTTCAATTGGGGTGATCATCCATCCATGGCTTCTGATGCTGTTGAAAATGGATGGTCACGATTTGCCTTCACGGGGTACAAGAGTTACACGCCGTCTCCTTCGAAAAGATCGGGACTTTTGGGAGCGTGTGCTGCACCGGGAGGGAGTGATTTTGGGAGAGAATCAGAGGCTGAGATAAGCTGGGAAGTGGCACGTGGATCTGCTGAGTTTATGCAGAAGGTGAGGTTGAATCCTGGTATAAAAAAATCTCATCAAAGCAACAACAATAATGGTTCTCTTGGCGTTGCTTCTATCATTAGAGGGGCTTTGCCTTTGCCTGGGCCTCCCCTGGGGAATTGTGCGTTCCCACAAGAAGCATATTTTGAGATTACCATTTTGTACTCACGTGGCGATGAGTGTGAATCTGTTGGGAAGAGTGGGGAAGGTGAGAAGACCAAGCTTTTGGTTCAAGGGAACTCCAATGGCAAAGGGAATTCCGAGGCTCTGGTTCATGTTACCAGTGGGAATGGAAGTAATAAAATCAACAATGTCGAAGGAGAGAGTGGGAAGGGTGAATCTGTGATGTTCTCGTTGGGGTTGACGACAGGGGGTTCTGTTCCTCTGAGAGTCCCCGGTAGCTATCCCGGGAGCATTGGCTTCAACTCCAACGGTTCTCTCTATCTTGATGGAATGAAACTTGTACGTGAATCGGAGAAGGCAGAGTGGGTGGGAACTGATAAAGTGATTGGCTGTGGATTTGATCCAAGGCAGAAGAAGGTTTTCTTCACAATAGACTCTGATCTGATGCATGTAATCCATTGCCAGACAGAGGAGTTTGGCACACCTCTTTTTCCTATCATGGCTGCAAATATAGACATTATGGTGTTAGTTAATTTTGGGCAAAGTGCATTCAAATATGCACCTGCGAATGCCCAGAGAACACCAAATCCATGCTTCATAGCCCCACTTGTAAATTCCCCTGCAGCTACCTTGGGCTACGATGACAGCAAGGAGCTATTCTCAATGGGAAGGATCGATTCTCAGTGGCTCAATCGGTCCACAACCAAAGGAAGCCACAATAATAATAATAATAACCATAATAACAATCGAACATTGGATTTTGACGAGGAGTCTGAGGCTGATCTGTTTGAAATCGTCATAGATGGTTCTGGAAAATATCCCAACACAGGATCATAG 1455 0.4708 MRQWIHVAVAAAAVGCVSTLMLVFLFRWCRKRNGRNFVEPTSLTRVESVQGGISVSRIHQQPFQLDQGSKNSNKGNYNYYVFRGGGVSGKRSVFNWGDHPSMASDAVENGWSRFAFTGYKSYTPSPSKRSGLLGACAAPGGSDFGRESEAEISWEVARGSAEFMQKVRLNPGIKKSHQSNNNNGSLGVASIIRGALPLPGPPLGNCAFPQEAYFEITILYSRGDECESVGKSGEGEKTKLLVQGNSNGKGNSEALVHVTSGNGSNKINNVEGESGKGESVMFSLGLTTGGSVPLRVPGSYPGSIGFNSNGSLYLDGMKLVRESEKAEWVGTDKVIGCGFDPRQKKVFFTIDSDLMHVIHCQTEEFGTPLFPIMAANIDIMVLVNFGQSAFKYAPANAQRTPNPCFIAPLVNSPAATLGYDDSKELFSMGRIDSQWLNRSTTKGSHNNNNNNHNNNRTLDFDEESEADLFEIVIDGSGKYPNTGS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03281 484 PANTHER IMMUNOGLOBULIN SUPERFAMILY MEMBER 5 87 472 IPR043364 GO:0098609
Vimu10g03281 484 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vimu10g03281 484 MobiDBLite consensus disorder prediction 438 455 - -
Vimu10g03281 484 SUPERFAMILY Concanavalin A-like lectins/glucanases 283 392 IPR013320 -
Vimu10g03281 484 Pfam SPRY domain 213 387 IPR003877 GO:0005515
Vimu10g03281 484 Gene3D - 172 400 IPR043136 -
Vimu10g03281 484 MobiDBLite consensus disorder prediction 438 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03281 Vimu-Chr10 43048094 43050093 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03281 - - gmx:100785312 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03281 10 43048094 43050093 Vimu10g03281 10 43048094 43050093 ECH