Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03244 ATTTTTTTTCCCATCAAACATATTTCAACCCCTTTGGCCAAGGTTCCTCATATAACACACACAACAATCTACCTTTCTACTCTCACAAATCAATCAACTGAGACAGCTATGAAGTCCCAAATGAAGAAAAAGAGAGTAACCCCTATTCCCAATACTCCTAGCAACGCCAGCGATCATATTTGCATCAACCCGGTTTGCTTCTTCTGCAGCATGGGAGAAGCAGATGCGTCTCTCAGAAGGGCTGGAATAACGACCTGCTTCAAAGAATTATTTCAGGGAGAGAATCATGAACAGCACGTGCTGGTGCTGAGTGGACTGTGGCACATTGCAATGACCCAACCCAGCGACCCAGAGTTCCCATCCTTCGGAATATTCAAGTGCATGGCAAGTCTAATCCACAAAGGGATAAACGACAGCCACTGGCTTCTCACAAATCAAAACATATACATACCCTATTACGCTGCTCACATCATTGGCTCTTACACGATGAACAAGGAGGAGTTTGCACAACTGGCCGTGCAATCAGGAGTGATACCGCCATTGCTAGACCTGCTCAGGGGGAAGATCAGTTGGGTTGAGCAAAGAGTTGCTGTTAGAGCACTTGGTCACTTGGCCAGTTACAAAAGCACGTTTGAATCAGTAGTACTGCACGAGCAAGAGGTAGTGAAGTTGGCCTTGAACTTGGCTTCCACTTGTTTAGAAGTGGTCTATGTTGACTTCGTAGCTGTGAAGGAAAACAAAAGGCTGGAGTATCACAGAAACTTGCTCACAAGAGGGGTTGGGGATTTGGAGATGGAGAATCGCAAGGCAGAGGAATGGGCTAGCCAGCTTCAGTGTTGGTCTCTTTATCTTCTGAACTGCTTTGCTTGCAAAGATAGGGCTCTGGATCTCATATGCAAGAAGGGGTTTCTCAAGGACTTGTGTGATATGTGGGGAGGGATGATAAATCACACGTCACCAGCAGGTGTTGGGCTGATACGAATCTTGTGTTATAGCAAAGAAGGAAGGAAAAACATTGCTCAGTTACCCAAAGTTGTGAACGCTCTAGGTAACCTTTCAAGATCTTCAGATGATTGGCAGTATATAGGTATCGATTGTCTCCTTCTCCTTCTCAAGGATCCAGATACGAGATACAAAGTTCTTGATGTTGCCGTTCCTTACCTGACTGATTTGATTGAACTTAAAAACCTTGGAGATAAATCAAACGTGGGTGAGACCATCACAAAGGTTCTTCTGAATTTGAAACCTAACAGACAAAAGGTTGGAGCAGTATTGCAAGAAGTGATGGATTTGAAAGTGGATAGGAGGGACCAGGAGAAGGTACTCTCGGAGGAAAACTTGGAGGAAGCAAAGGCTTTGGTGAGTTTGATAAAACAACAAGCGAATCACAAGTTCAGGTTGGGAAAGGTTGAAGAAGCTTTGGTGAAATACTCCGAAGCTCTTGGTGTTTGTCCCTTGAAGTTTAGGAAAGAGAGAATGGTGATTTACAGTAACAAAGCTCAGTGTCATATTTTACTGAAGGACGCAGATTCAGCTATCAGTGACTCAACGCGTGCTCTTTGCCTATCCAACCCTGCAAACAGCCATAGGAAAAGCCTTTGGAGAAGATCACAAGCATATGACATGAAAGGAATGGCAAAAGAGAGTCTCATGGACTGCATAATGTTCATGAACAGTAGCATCAAGTCGGGCTGTGAGACCATGCGTGTCAAAATTCCATACCACCCTGCGCGCCTGATCTGCAAGCACATGGATGCCACGTGGCTCTTTGCCACTGCTCGCTCCAGGCTAGAGAAATCAATGCAAGAATTGAACCAAGTTGGCGGGCATGATCAGAACCAAAAGCAACCATGTGATGATAATAAGACCATGATGACGATGATAGAAAATACAAACAGTCACATGCCCGGTAATTAA 1917 0.4465 IFFPIKHISTPLAKVPHITHTTIYLSTLTNQSTETAMKSQMKKKRVTPIPNTPSNASDHICINPVCFFCSMGEADASLRRAGITTCFKELFQGENHEQHVLVLSGLWHIAMTQPSDPEFPSFGIFKCMASLIHKGINDSHWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQLAVQSGVIPPLLDLLRGKISWVEQRVAVRALGHLASYKSTFESVVLHEQEVVKLALNLASTCLEVVYVDFVAVKENKRLEYHRNLLTRGVGDLEMENRKAEEWASQLQCWSLYLLNCFACKDRALDLICKKGFLKDLCDMWGGMINHTSPAGVGLIRILCYSKEGRKNIAQLPKVVNALGNLSRSSDDWQYIGIDCLLLLLKDPDTRYKVLDVAVPYLTDLIELKNLGDKSNVGETITKVLLNLKPNRQKVGAVLQEVMDLKVDRRDQEKVLSEENLEEAKALVSLIKQQANHKFRLGKVEEALVKYSEALGVCPLKFRKERMVIYSNKAQCHILLKDADSAISDSTRALCLSNPANSHRKSLWRRSQAYDMKGMAKESLMDCIMFMNSSIKSGCETMRVKIPYHPARLICKHMDATWLFATARSRLEKSMQELNQVGGHDQNQKQPCDDNKTMMTMIENTNSHMPGN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03244 638 Gene3D - 76 414 IPR011989 -
Vimu10g03244 638 Gene3D Tetratricopeptide repeat domain 418 563 IPR011990 GO:0005515
Vimu10g03244 638 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 57 625 - -
Vimu10g03244 638 SMART arm_5 165 206 IPR000225 GO:0005515
Vimu10g03244 638 SUPERFAMILY ARM repeat 142 429 IPR016024 -
Vimu10g03244 638 SUPERFAMILY TPR-like 446 553 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03244 Vimu-Chr10 42801177 42804413 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03244 - - gmx:100777591 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03244 10 42801177 42804413 Vimu10g03244 10 42801177 42804413 ECH