Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03232 ATGTCGAATAGATCCGGTCAGGGTAGACAAGACAACAATAACAAAGGTTTCACCAAAACCCATAACCACAACAATTTTCACCCCAAAAATCCCAATCCAACCCTCTCAACTTCTCTCAGACAAACCCAACCATCCATCCCCGCCACCACTAGCGGAGTCCCAAACAGAGGCCATAATGGGAATTTCGTTAAATACTTACCACAAGACGAGGCCGTGGCGGCGGGTCTTGGCGCCGAAGATGGAGCATTGGATCCCCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACACTTGTCACGCTTGCTCAAGTGCAAACCTAAGCAATTCTGGACGCAAGTGGCTGCTGACGCCTCCCTACATGAGTTTTTGGACAGCTTCTTGCAATTTAGAAACAGGTGGTATGATTTTCCTCATCGCGGGGTGAAAGGGATTGTAGCAGGTGTTATTGTTGGCGAGAGGGATTTGAGTCGCCGCGTTTTCATGGTATTGTATCGCATTTCTTCGAATAAAGACCCTGGTGCTCGACCGGCCGATGCCCTCAGTTTGAGAGACCATGGAGTTCTTTTGCAGGAGAAAAAGTTGCTTGAATTGCCAAAGTTGTTGGATATATGTGCCATATACTATCATGAAAATGAAGAATTAACGAGATCACTGGTCAGAAATGCCTTCAGTGCTCAACCTTGGCTCCATAATAATCTGACTGCAGTAATATCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGCAGTTCATCATTGGAGGTTTTATTTTCTTCTGGAAATCTCGATGACCACAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTGATGGACTTTATAAATGATGCAATTGTATCAATGGATTCTTTTGTTAGTGCATACGAACCAGCAGCTGTATTCTTTTCTTGTCCAGTTGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTACAAAAGGGGTTCCGTATGATTTTTTCTGACAAACATGATGGCACAACATCTAATATTTTGGTTAGTCTGAAGATGTTAAAAATAAGATTGGTAAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATGGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAACGTAGAGGACCCAGTCATCAGAGCAGATATTCTTGTTCAAACAATTCGAGATATCAATTCGGTATCATCACATTCTCGGGAAAGCCATCAGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTTAATATACTGAGTGGGATTGAGAGATTAAAGGATAGTGGATGGATATTCATTGATAATGAACAGTTTCAATATCTATCCGGGATGATGAGTTCTGTGAAACAGATTTATAAGGACCCATATTCTGCAACGGCCCCTGTGCCAAACCAATCATTACTGACGGATGAAGATGCTGCAATTGCAGAGTCGAACATCAGTCAAATTAGGGACCTGTTCCCTGATTACGGTAAAGGATTTTTAGCTGCGTGTCTTGAGGTTTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATCAAGATCTGCAGAGCCTGGATACCTCCCTAGAGACATTACCACCAGCCAAGCCTACCACTGTGAGTGGGAATGATAAAGGAAAAGGTAAATTAATTGATTCTACGTCAGCATCCTCAAATCCAGAAGTCGTAAGGGGGAAGCAACAGACAGAGGGGTCATTGATGTCATCCTCTGCTTCACTAGGAAAATTTATAAGGAAATCTAGAGCTGATTTGCCTGATCTCAGTATTCTGGATAAAAAGGACGAGAAAGATACATCAAAAACTGCTGCTATGATTTTACAATATGAATATGAAGATGAGTATGACGACTCTTTTGATGACTTGGGTTTAAGTGTAGCAGACTCTGGATTAGAAGAAAATGAGATACTTGGTGACCAAATAAATGCAAAATCAGGGAAGTCGTGGGCAACAGAGAGTGGAAACTCGGTAAAAGATGTCCCTGATTCAAAATGGGGCTCCAGGAGAAAGCCACAGTACTATGTAAAGGATGGTAAGAATTACAGCTACAAAGTGGCTGGTGCGGTAGCAGTTGCAAATTCTGGTGAAGCTTCACTAGTAACGCAAGCTCAGAAAGAGTTAATACATGGCCTTGGACGAGGTGGAAACCTTCCTCTTGGAGCAGTAAAGAAGTTGACGGATTCCTACAAGGAGGATGATAACCAATCCCAGGTTTCTGAAATGGAAGGCAATGGGATTCCGGGCAAATCTTTTGGTAGGGGTAGTAGGAAGGAAGGTGGAAGACAGATTGCATCTCATCAGCAGCAGCAGCAGCCTGTGCAACAATCTGGTGATTCTGAGGTGGATGGGAATAACCAAAGGGGTAGAGGAAGAGGGAGAGGGAGGGGCAGAGGAGGAGGAAGAAACAATCACCACCAGAAGGACCGATCCATGAAGAAGCATTTCTCTGGAGTGAGCGGATTTTAA 2553 0.432 MSNRSGQGRQDNNNKGFTKTHNHNNFHPKNPNPTLSTSLRQTQPSIPATTSGVPNRGHNGNFVKYLPQDEAVAAGLGAEDGALDPLESQRVVDLLNTHLSRLLKCKPKQFWTQVAADASLHEFLDSFLQFRNRWYDFPHRGVKGIVAGVIVGERDLSRRVFMVLYRISSNKDPGARPADALSLRDHGVLLQEKKLLELPKLLDICAIYYHENEELTRSLVRNAFSAQPWLHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNLDDHNAAFLQADLLEVMDFINDAIVSMDSFVSAYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRMIFSDKHDGTTSNILVSLKMLKIRLVKFGWQLLHLCYLSDEVFRDGIPLPAATKMFPANVEDPVIRADILVQTIRDINSVSSHSRESHQKETFLQDVERNFNILSGIERLKDSGWIFIDNEQFQYLSGMMSSVKQIYKDPYSATAPVPNQSLLTDEDAAIAESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHQDLQSLDTSLETLPPAKPTTVSGNDKGKGKLIDSTSASSNPEVVRGKQQTEGSLMSSSASLGKFIRKSRADLPDLSILDKKDEKDTSKTAAMILQYEYEDEYDDSFDDLGLSVADSGLEENEILGDQINAKSGKSWATESGNSVKDVPDSKWGSRRKPQYYVKDGKNYSYKVAGAVAVANSGEASLVTQAQKELIHGLGRGGNLPLGAVKKLTDSYKEDDNQSQVSEMEGNGIPGKSFGRGSRKEGGRQIASHQQQQQPVQQSGDSEVDGNNQRGRGRGRGRGRGGGRNNHHQKDRSMKKHFSGVSGF 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03232 850 CDD CUE_ASCC2 500 539 IPR041800 -
Vimu10g03232 850 Pfam CUE domain 500 540 IPR003892 GO:0043130
Vimu10g03232 850 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 11 849 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 790 812 - -
Vimu10g03232 850 SUPERFAMILY UBA-like 499 555 IPR009060 GO:0005515
Vimu10g03232 850 MobiDBLite consensus disorder prediction 551 597 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 571 597 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 819 840 - -
Vimu10g03232 850 Gene3D - 499 541 - -
Vimu10g03232 850 ProSiteProfiles CUE domain profile. 498 541 IPR003892 GO:0043130
Vimu10g03232 850 SMART cue_7 498 540 IPR003892 GO:0043130
Vimu10g03232 850 MobiDBLite consensus disorder prediction 757 850 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 674 699 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 674 689 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 1 57 - -
Vimu10g03232 850 MobiDBLite consensus disorder prediction 1 62 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03232 K18667 - gmx:100778129 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03232 10 42736012 42741225 Vimu10g03232 10 42736012 42741225 ECH