Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03222 ATGCATACGCATGTGTGGAAGCAGATCAGAGACAGGGAAGGTGGGAAAGTGCGCGCGAACAATTTCGTCAATAGCATAAAATCCTATCGCATTTCGCAACTCCAATTGGCGAATCACAAAGACATCGTGTCCCCTCACAAGGGCGCCGTCAACTCCCTTCAGATTGATTCGACAGAGGGAAGGTATCTGCTCTCCGCCGCCTCCGATGCCTCTGTAGCCGTCTACGACGTTCAACGATCCGCCACTTCCGAAGCTTCCGCCGCCTTCTGCAAACACAGGTGCTTATTTGTCGTTGACAAGCAGCACCGACAGGCCCACAAATATGCCGTCTCCACAGCCATATGGTATCCCATTGACACCGGTTTGTTCGTCACTGGCTCATACGATCATCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAACTTCAAAATGCCAGGAAAAGTTCATAGGATTGCAATGTCTAATTTGTCAACGTCTCACATGCTTATCGCTGCTGGCACTGAGGATGTTCAAGTTCGCCTTTGTGATATTGCTTCCGGGGCTTTCGCTCATACTTTGTCCGGTCACCGAGATGGTGTAATGACTGTTGAGTGGTCTAATTCAAGTGAATGGGTATTAATTACCGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGGCGTGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGGTCCATGATAACAAAGGATTCGAGTGCAAAATTGCGTGGTGCCCAAAAGAAACATGCTAATGGAAGTGGTTGCAGACAACAACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCAGGAATGCTGTCTACTCAGGATCGGGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAGGCTACAGAGGATGGCATGTATCTACTAAGTGCAGGATCTGATTCAAGATTAAGGTTGTGGGATGTTCAATCTGGCTGCAACACACTTGTAAACTTTGAAACAGTCCGTCTGCAAATAAATAAACCTCTTCAATTAGCCACCACTCAAGATTCCGCCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGTACACCTACACGGTATTACGTGGCCACTATGAATGTGTGAACTCTTGTTGGTTTAATCAACAAAATCAGGAACTTTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCAAGATCAATCGATGATGAAATGGGTGAAGGTCCTGCTGAGGATCAGGATAACTGGAGTAGTTGA 1332 0.467 MHTHVWKQIRDREGGKVRANNFVNSIKSYRISQLQLANHKDIVSPHKGAVNSLQIDSTEGRYLLSAASDASVAVYDVQRSATSEASAAFCKHRCLFVVDKQHRQAHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRIAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLITGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSAKLRGAQKKHANGSGCRQQPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVQSGCNTLVNFETVRLQINKPLQLATTQDSALVFVPCMRSVKAFDMWSGYTYTVLRGHYECVNSCWFNQQNQELYTGGNDRQILVWSPARSIDDEMGEGPAEDQDNWSS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Vimu10g03222 443 MobiDBLite consensus disorder prediction 263 292 - -
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 225 - -
Vimu10g03222 443 ProSitePatterns Trp-Asp (WD) repeats signature. 210 224 IPR019775 -
Vimu10g03222 443 FunFam Excision repair cross-complementation group 8 283 424 - -
Vimu10g03222 443 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 6 443 IPR042238 GO:0006283
Vimu10g03222 443 SMART WD40_4 91 136 IPR001680 GO:0005515
Vimu10g03222 443 SMART WD40_4 292 334 IPR001680 GO:0005515
Vimu10g03222 443 SMART WD40_4 183 223 IPR001680 GO:0005515
Vimu10g03222 443 SMART WD40_4 382 421 IPR001680 GO:0005515
Vimu10g03222 443 SMART WD40_4 36 76 IPR001680 GO:0005515
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 421 IPR001680 GO:0005515
Vimu10g03222 443 Gene3D - 6 424 IPR015943 GO:0005515
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 232 IPR001680 GO:0005515
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 145 IPR001680 GO:0005515
Vimu10g03222 443 Pfam WD domain, G-beta repeat 188 223 IPR001680 GO:0005515
Vimu10g03222 443 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Vimu10g03222 443 Pfam WD domain, G-beta repeat 303 334 IPR001680 GO:0005515
Vimu10g03222 443 Pfam WD domain, G-beta repeat 387 421 IPR001680 GO:0005515
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 85 IPR001680 GO:0005515
Vimu10g03222 443 SUPERFAMILY WD40 repeat-like 43 423 IPR036322 GO:0005515
Vimu10g03222 443 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Vimu10g03222 443 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Vimu10g03222 443 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Vimu10g03222 443 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Vimu10g03222 443 FunFam Transducin/WD40 repeat-like superfamily protein 6 271 - -
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 421 - -
Vimu10g03222 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 338 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03222 46 239 Miscellaneous Gene Families AT5G08390 21.649 4.61e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03222 K10570 - gmx:100815581 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03222 10 42651988 42655516 Vimu10g03222 10 42651988 42655516 ECH