Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03213 ATGGCGGTTATGGATTACAGAGGCCATCTGCTTCTCCTTATTCTCTTTCTTCTTTCATCAAACTTTGCAACGTCTCACTCCATAGTGCGCTTCCTTCCTGGCTTCGATGGACCCCTTCCTTTTCTACTTCAAACTGGGTATGTGGAAGTGGGTGAAAGTGAAGCAGAGGAGAATGCAGAACTGTTCTACTATTTTATTGAGTCGGAGAATGACCCCAAAGGAGACCCTCTTCTTCTTTGGCTAACTGGGGGACCCGGTTGCTCCGCTTTTTCTGGGTTAGTTTTTGAAATAGGTCCACTGTCCTTTGAAAACCAGGAATACAATGGGAGCTTACCTAATTTAATATTGAAGCCACAATCATGGACAAAGGTAAGTAGCATTATATTTGTGGATCTGCCAGCGGGTACAGGCTTCTCTTATCCCAAAACAGAACTTGCTGTTAATCAAAGTGCCTCCAAGCTAGTTCGCCATGCTCATCAATTTCTTAGGAAGTGGCTAATTGATCATCCGGAATTTCTCTCAAATGAGGTGTACATTGCTGGCGACTCATTTTGCGGCCTTCCTATACCAGGTTACATTCTGGGAAATCCCATAACAACATCCACTGAAAAAAACTACGAAATTCCGTTTAATCATGGCATGGCACTCATTTCTGATGAACTCTACGAGAGTCCAAAAGGTGAAAGGCTAACAAGTTTTTATAATTTACCGAGTAAACAGTCACTGCAAAGGAATTGCAGAGGAGAGTATCAAAACATAGACCCGACAAACGCATTTTGTGCAAGGGACATGCAATCCTACGAGGAGTCTATTTCAGGAATTTCAATTGGGCATGTTTTGGAACCTGATTGTGACGAGTCTGCTCTGCGTAATCCAATTCAAGATACTTGGAGCTGCAGGAGGTCTCTTGCTCATGAATCCTATCCTCTCACAATGCCACCTTTAAATTGTAGGGCTCATGCATATGTCCTTTCTAGCTATTGGGCCAATGATGATAATGTCCGCAAAGCACTGCATATTCGGAAGGGAACTAAAGGGAAATGGAAGCGCTGTAACTATGACATACCTTTTAAGACCGATATCTCTAACAGCTTCCAATATCACGTCAATCTCAGCAGAAAAGGCTACCGTTCATTGATATACAGTGGGGATCATGACATGATAGTTCCATTCCTGTCTACACAAGCGTGGATAAGAGCTTTAAACTATTCCATCGTCTCTGACTGGAGGCAGTGGTATTACAATGGCCAAGTGGCAGGGTATGCCCCTAACTCTGGAAAATACACAAGAACTTACTCAAATCGGATGACATTTGCAACTGTGAAGGGTGGAGGGCACACAGCTCCGGAGTTCAAACCTGAGGAATGTTTAGCCATGTTCATGAGATGGATATCTAATAAGCCACTCTGA 1410 0.4333 MAVMDYRGHLLLLILFLLSSNFATSHSIVRFLPGFDGPLPFLLQTGYVEVGESEAEENAELFYYFIESENDPKGDPLLLWLTGGPGCSAFSGLVFEIGPLSFENQEYNGSLPNLILKPQSWTKVSSIIFVDLPAGTGFSYPKTELAVNQSASKLVRHAHQFLRKWLIDHPEFLSNEVYIAGDSFCGLPIPGYILGNPITTSTEKNYEIPFNHGMALISDELYESPKGERLTSFYNLPSKQSLQRNCRGEYQNIDPTNAFCARDMQSYEESISGISIGHVLEPDCDESALRNPIQDTWSCRRSLAHESYPLTMPPLNCRAHAYVLSSYWANDDNVRKALHIRKGTKGKWKRCNYDIPFKTDISNSFQYHVNLSRKGYRSLIYSGDHDMIVPFLSTQAWIRALNYSIVSDWRQWYYNGQVAGYAPNSGKYTRTYSNRMTFATVKGGGHTAPEFKPEECLAMFMRWISNKPL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03213 469 Gene3D - 316 469 - -
Vimu10g03213 469 Pfam Serine carboxypeptidase 33 190 IPR001563 GO:0004185|GO:0006508
Vimu10g03213 469 SUPERFAMILY alpha/beta-Hydrolases 29 468 IPR029058 -
Vimu10g03213 469 FunFam Carboxypeptidase 316 468 - -
Vimu10g03213 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 453 IPR001563 GO:0004185|GO:0006508
Vimu10g03213 469 Gene3D alpha/beta hydrolase 23 293 IPR029058 -
Vimu10g03213 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Vimu10g03213 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vimu10g03213 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vimu10g03213 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03213 Vimu-Chr10 42563571 42569169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03213 23 57 Calmodulin-binding Proteins AT2G22960 57.143 2.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03213 K16296 - gmx:100792006 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03213 10 42563571 42569169 Vimu10g03213 10 42563571 42569169 ECH