Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03207 ATGTCATGGCTGGCTCGCTCCTTCGGAAATTCTCTCCGACTCGATGGCGACGGAGATCATGAAAACGACACCGTACTCGATCCACCTACCACGTCATTGAGAGACCCCGTGCAGCCGCAAGCGCGAGAAAATGAATTCGGATCAGACTCAGAAGAAGAAGAAGAAGACGAAGAAACGGAAGGGCGTGGAGTCAAAGAAGACCTCGACGAAATCAAGCAAACCCTGACTCGCCAATTTTGGGGAATGGCATCCTTCCTCACTCCACCGTCAACGGATTCTCATTCTCATTCTCTTTCTCTTGCTCATACTCAATCCGATCCCTCTTCGTTTATCTCCGATCAATTCAAACATCGCTCTTTTTCTCCGAACGAAGAACCGCAATTGGACGAGGCTCCCGTTTCCAATCGCTCTAATTCTGTTTCGTTGGGATCCGATTCGGAAGGGGATTGCGGTCCAGAACAACGCGCTGTTGGAATCACGGAGGAGGTCTTGGCCTTCGCGATGAACATCGCCATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAAGAAGACGACACCGACGATTTTGACATGTCTGATGCACAAAAAGAGCATGCAGCGGTTGTTGAAAGATTAACTCCTAGATTAGCTGCGCTCAGAATTGAACTATGCCCTTGCCATATGAGTGAAAGCTATTTCTGGAAAGTGTATTTTGTACTATTGCATTCAAGGCTTAACAAAGAAGATGCAGGGGTTTTGTCTACAACCCAGGTCACGGCAGCCAGAGCAATGTGGATGCAGGAATTGCATAAACAAACAAAGCCTGACTTTGAAATTTTTGGAAGAAGTGCTTCCTACCCAAAAGACAACGCACGGTACAATGAATTAACTCCCAGCCTATTAGATGATGCTTATTCTGATGACATGCCTAATCAGACATATGGATATAGAACAACCTCTTTTTCCGTGAGGACAGATTATGAGACTGATAAATACATGGTTGAAACATCTGGAACGCATCTCACTGATAAGTCTGTTATTGAGGAAAAGTCAATTATTAAAACTGATAACAAGGATCCGAAATGTGGTCGACCATCTCAAATTATTATTAAGGATTATGATGAAGAAGACGATGAGTGGCCAGAGGAAGATTCTGATTTAGGAGAATATGGTGGAACAACTCACCTCATAGTAAATGAAGAAGACATATCCTTCAGCGATCTCGAAGATGATGATTTTGGCATTAAACCTGTTACTTTAAGTACAGGTGGTTTGAAATTGGTTTGA 1272 0.4403 MSWLARSFGNSLRLDGDGDHENDTVLDPPTTSLRDPVQPQARENEFGSDSEEEEEDEETEGRGVKEDLDEIKQTLTRQFWGMASFLTPPSTDSHSHSLSLAHTQSDPSSFISDQFKHRSFSPNEEPQLDEAPVSNRSNSVSLGSDSEGDCGPEQRAVGITEEVLAFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQKEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGVLSTTQVTAARAMWMQELHKQTKPDFEIFGRSASYPKDNARYNELTPSLLDDAYSDDMPNQTYGYRTTSFSVRTDYETDKYMVETSGTHLTDKSVIEEKSIIKTDNKDPKCGRPSQIIIKDYDEEDDEWPEEDSDLGEYGGTTHLIVNEEDISFSDLEDDDFGIKPVTLSTGGLKLV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03207 423 MobiDBLite consensus disorder prediction 88 117 - -
Vimu10g03207 423 MobiDBLite consensus disorder prediction 1 69 - -
Vimu10g03207 423 ProSiteProfiles BSD domain profile. 188 240 IPR005607 -
Vimu10g03207 423 MobiDBLite consensus disorder prediction 47 63 - -
Vimu10g03207 423 Pfam BSD domain 188 244 IPR005607 -
Vimu10g03207 423 MobiDBLite consensus disorder prediction 88 153 - -
Vimu10g03207 423 Gene3D BSD domain 154 249 IPR035925 -
Vimu10g03207 423 SMART wurzfinal6 188 240 IPR005607 -
Vimu10g03207 423 MobiDBLite consensus disorder prediction 128 145 - -
Vimu10g03207 423 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 408 - -
Vimu10g03207 423 SUPERFAMILY BSD domain-like 158 244 IPR035925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03207 Vimu-Chr10 42529093 42532124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03207 158 240 EF-hand Containing Proteins AT1G69030 31.183 4.05e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03207 - - gmx:100794286 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03207 10 42529093 42532124 Vimu10g03207 10 42529093 42532124 ECH