Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03195 ATGGCACCACCGTTGTTCAATTGGGGGGTGAAGGACACCCACAGGGGAACCCCTGTGGTGGTGAAGATGGAGAACCCAAATTGGTCGATGGTGGAACTGGAAGGTCCCGAAGAAGATGACTTAATGACACCAACTTCTCCTACGGGTGTTTCACGAGACAAAGGAAAAGGAAGAGGCAAAAATGCGAAACAACTCACCTGGGTTCTTCTCCTCAAAGCACACCGCGCCGCCGGTTGCCTGACCTCCCTGGCGCCGGCATTGTGGGGGCTCGTCGCCGCCGTGAAGCGCCGCGTCGCCGCTGGGAAAACCGATGCGGACACCGACGGCGGGAGAGAGCTGGAGAACCCCACCGTGAAGACCCGTTTCTATTTCTGCATCAAGGTTTTTCTGTGGCTTTCCGTTTTCCTCTTGTTTTTCGAGGTTGCTGCGTACTTCAAAGGGTGGCATTTCGTTGCGGCGAGGATTCAGTTGGAGCACTTTCTGTGGGCACCCGCTTTTGGACTCAAGGATTTCTTCGTTTGGTTCTACGCGAGATGGGTTTTTGTTCGCGTGGAGTATCTCGCTCCTCCCCTGCAGTTTCTAACCAATGCGTGCATCGTGCTTTTCCTTATTCAGAGTGTGGATAGGCTTGCTCTGTGTTTGGGGTGTTTCTGGATCCGGTTTAAGAAGATCAAGCCTGTCCCTAAAAGTGGGGATGCAATTGTAGATCTTGAATCTGGAGAAAGCAAGGGTTTTTCTTTTTTCCCAATGGTTCTTGTGCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAATCTATTGGTGCGGTGTGTAATTTGGATTGGCCGAAGGGGAAGTTGTTGATTCAGGTTTTGGATGATTCCGATGACCCAACGACGCAGTTGCTAATAAAGGAGGAGGTTCATAAGTGGCAACAAGAGGGTGCCAACATTTTGTACCGACATCGCGTGATTAGAGATGGGTACAAGGCCGGGAATTTGAAATCCGCTATGAATTGTAGCTACATTAAAGACTATGAGTTTGTTGCAATTTTTGATGCAGATTTTCAGCCTACTCCAGATTTTCTAAAAAAAACGGTTATTCACTTTAAGGATAATGATGAATTGGGGCTTGTTCAAGCAAGATGGTCCTTTGTGAACAAGGATGAGAACCTCCTAACGAGGTTGCAGTACATTAACCTGTCTTTTCATTTTGAGGTAGAGCAGCAAGTGAATGGGGTTTTCCTTAACTTCTTTGGGTTCAATGGAACTGCTGGAGTTTGGAGGATAAAGGCTTTGGAGGAATCTGGTGGTTGGTTGGAGAGAACTACTGTTGAGGACATGGACATTGCCGTTCGAGCTCATCTTTATGGCTGGAAATTCATTTTCCTCAATGATGTTGAGTGCCAATGTGAGATACCGGAATCTTACGAAGCTTACAGGAAACAGCAGCACAGATGGCATTCTGGGCCAATGCAGTTGTTCCGCCTTTGTTTGCCTGATATCATTCAGTCCAAGATAAGTGTGTGGAAGAAATTCAACATGATATTTCTCTTCTTCCTTCTTAGAAAGCTGATCTTACCATTCTATTCGTTCACCTTGTTTTGTATAATTCTACCTATGACAATGTTCGTGCCGGAGGCTGAGCTTCCTGCGTGGGTTGTGTGTTACATCCCTGCTGCCATGTCCTTTCTCAACATTCTTCCGGCTCCGAAGTCCTTTCCCTTCATTGTCCCTTATCTCCTATTTGAGAACACCATGTCAGTTACCAAGTTCAATGCCATGATCTCAGGCCTGTTCCAGCTAGGTAGTGCATACGAGTGGGTGGTCACTAAGAAATCTGGTCGTTCTTCTGAAGGTGATTTGGTTTCATTGATTGAGAAAGGACCAAAGCTTCAAAGAGGGTCCTCAGTACCTGATCTTGAGGAAATAAAAGTGGAACTTAAAAGGCAGGAGGAGAAGACCTCTAAGAAGAAGAAAAAGCATAACAGAATATATATGAAGGAACTTGCTTTGGCCTTTCTACTCCTAACAGCCTCAGCAAGGAGTCTCCTATCAGCACAAGGGATCCATTTCTACTTTTTGTTATTCCAGGGAATATCATTCCTCTTGGTTGGTCTTGACTTGATTGGTGAACAGGTGGACTGA 2130 0.4634 MAPPLFNWGVKDTHRGTPVVVKMENPNWSMVELEGPEEDDLMTPTSPTGVSRDKGKGRGKNAKQLTWVLLLKAHRAAGCLTSLAPALWGLVAAVKRRVAAGKTDADTDGGRELENPTVKTRFYFCIKVFLWLSVFLLFFEVAAYFKGWHFVAARIQLEHFLWAPAFGLKDFFVWFYARWVFVRVEYLAPPLQFLTNACIVLFLIQSVDRLALCLGCFWIRFKKIKPVPKSGDAIVDLESGESKGFSFFPMVLVQIPMCNEKEVYQQSIGAVCNLDWPKGKLLIQVLDDSDDPTTQLLIKEEVHKWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYIKDYEFVAIFDADFQPTPDFLKKTVIHFKDNDELGLVQARWSFVNKDENLLTRLQYINLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLYGWKFIFLNDVECQCEIPESYEAYRKQQHRWHSGPMQLFRLCLPDIIQSKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKGPKLQRGSSVPDLEEIKVELKRQEEKTSKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03195 709 Pfam Glycosyl transferase family group 2 343 538 IPR001173 -
Vimu10g03195 709 MobiDBLite consensus disorder prediction 37 58 - -
Vimu10g03195 709 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 178 706 - -
Vimu10g03195 709 Coils Coil 635 655 - -
Vimu10g03195 709 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 245 467 IPR029044 -
Vimu10g03195 709 FunFam probable xyloglucan glycosyltransferase 5 242 467 - -
Vimu10g03195 709 SUPERFAMILY Nucleotide-diphospho-sugar transferases 251 527 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03195 Vimu-Chr10 42452356 42454997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03195 4 709 Miscellaneous Gene Families AT4G07960 77.051 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03195 - - gmx:100805969 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03195 10 42452356 42454997 Vimu10g03195 10 42452356 42454997 ECH