Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03190 ATGCTGTCTAGGAAGGCTAGTGAGGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGATGGCAAGAGTACGACAAAAATCCTTATCACCTCATTCGAAACCCGACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTGAATCATGGCTTGAGAGAAATCCTGAAATTGTGGGGATGAAGCAAGATGGGGTATCTATATTTAGAGAGCTTGCCCTGTTCCAAGATTATCATGGATTACCTGCTTTAAAAAAGGAACTGGTGGAATTTATGTCCAAAATAAGAGGAAATAGAATAAAATTTGCTCCGGAGAAGCTGGTCCTTACCGCTGGTGCCACTCTTGCTAATGAGATTATGATGTTTTGCCTTGCTCAACCAGGAGAGGCTTTCATTCTTCCCACACCCTACTATCCCGGGTTTGATAGAGATCTGAAATGGAGAACAGGGGTTGAGATTGTTCCATTGCATTGCTCAAGTTCAAATGGTTTCAGAATCACTTCCTCTGCTTTAAAACAAGCCTATCAAAAGGCACAAAAATTGAATCTCAAAGTGAAAGGGGTCTTAGTAACCAATCCCTCGAACCCACTAGGAACAACCATGACCAAACCGGAACTTAACCTTCTAGTTGATTTCGCAATCGAGAACAACATTCACATAATCAGCGACGAAATCTACTCGGGCACGGTCTTCGATCCACCCGAATTCGTTAGCATAATGGAGGTTGTGAACGAGAGAACAAGCAGCATCAACAACATTCGGAATCGTACTCACATAATATACAGTCTCTCCAAAGACCTCGGAGTACCAGGATTTAGGGTGGGGATGATTTACTCTGAAAACGAAACGGTGGTGGCTGCCGCAACAAAAATGTCAAGCTTTGGATTGGTTTCATCACAGACTCAACATTTGGTGGCGAACGTGCTGAAGGACAAGAAGTTCGCTTTTAATTACATTGAAGAGAATCAGAGGAGAGTGAAGAGGCGCATGGAGATGCTAGTTTGTGGTCTGAGAAACGCAGGGATTCAGTGCTTGAAAAGCAATGCAGGGTTGTTCTGTTGGGTGGACATGAGACATTTGTTAAACTCTGCGACTTTTGAGGCAGAGAAGGAGCTTTGGATGATGATCCTTTGCCATGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTCTGAACCTGGGTGGTTTAGGGTATGTTTTGCCAACATGTCCGAAGCCACGTTAAAAGTTGCAATGCGGCGAATGAAGGCTTTTATAGATTCAACCGTCTCTGTTGTCAACGATAACGGTTGTACTTGTGAGCAATCTGTCAGGGTCAATTGCTGA 1347 0.4395 MLSRKASEDSHGQDSSYFLGWQEYDKNPYHLIRNPTGIIQMGLAENQLSFDLLESWLERNPEIVGMKQDGVSIFRELALFQDYHGLPALKKELVEFMSKIRGNRIKFAPEKLVLTAGATLANEIMMFCLAQPGEAFILPTPYYPGFDRDLKWRTGVEIVPLHCSSSNGFRITSSALKQAYQKAQKLNLKVKGVLVTNPSNPLGTTMTKPELNLLVDFAIENNIHIISDEIYSGTVFDPPEFVSIMEVVNERTSSINNIRNRTHIIYSLSKDLGVPGFRVGMIYSENETVVAAATKMSSFGLVSSQTQHLVANVLKDKKFAFNYIEENQRRVKRRMEMLVCGLRNAGIQCLKSNAGLFCWVDMRHLLNSATFEAEKELWMMILCHVGLNISPGSSCHCSEPGWFRVCFANMSEATLKVAMRRMKAFIDSTVSVVNDNGCTCEQSVRVNC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 41 67 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 74 90 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 293 316 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 261 285 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 133 154 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 187 211 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 111 131 - -
Vimu10g03190 448 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 223 246 - -
Vimu10g03190 448 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 292 421 - -
Vimu10g03190 448 Pfam Aminotransferase class I and II 39 421 IPR004839 GO:0009058|GO:0030170
Vimu10g03190 448 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 426 - -
Vimu10g03190 448 CDD AAT_like 75 424 - -
Vimu10g03190 448 Gene3D Aspartate Aminotransferase, domain 1 27 421 IPR015422 GO:0003824
Vimu10g03190 448 Gene3D - 61 316 IPR015421 GO:0003824
Vimu10g03190 448 SUPERFAMILY PLP-dependent transferases 1 426 IPR015424 -
Vimu10g03190 448 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 61 316 - -
Vimu10g03190 448 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 267 280 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03190 Vimu-Chr10 42410936 42414412 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03190 K01762 - gmx:100803507 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03190 10 42410936 42414412 Vimu10g03190 10 42410936 42414412 ECH