Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03185 ATGGGAAGGTACAATTGGTTTACTTCTCAGCCCTACCCTCTTGAGAGCCCCAACCCTAGTTACAGTGACGAGGAGTATGCTGATGTGGATTGGGACAGCCTTGGATTTGGATTGATGGCTACTGATTATATGTATATTACTAAATGTTGTGAGGGCCAACATTTTGAAGAAGGCCAACTCAGTCGATATGGGAACATTGAACTCAGTCCAGCTGCCGGTGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACAAAAGCATACAGAAAAGAAAATGGGCGCGTGCTACTCTTTCGTCCGGAACAAAATGCCATTAGAATGAAGATTGGTGCAGAAAGAATGTGCATGGCATCTCCTTCCATAGAACATTTCGTTCATGCTTTGAAACAAACTGTCTTGGCTAATAAACGTTGGATTCCTCCACCGGGAAAAGGGTCCTTGTACCTCAGGCCTCTGCTCTTAGGAACGGGTCCAGTTTTGGGTTTGGCTCCCGCACCAGAATACACATTCCTCATATACGCTTCCCCTGTTCGCAACTATTTCAAGGAGGGTTCGGCGCCGCTCAACTTGCACGTAGAGGAGAACTTTGACCGTGCTTCTCGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTTTTGATGGCACAAACTACAGCCAAGAAAAGAGGATTTTCAGACGTGTTGTACCTTGATTCAGCCACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGAAAATGCATCGCTACTCCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCGGGTGATCTTGGCTATCAGGTAGAAGAGCGTGCTGTTGGTGTGGATGAATTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCTGTAGGTGTTGCCCCTGTAGGGAGTATCACGTATCAGGATAAAAGGTAA 975 0.4554 MGRYNWFTSQPYPLESPNPSYSDEEYADVDWDSLGFGLMATDYMYITKCCEGQHFEEGQLSRYGNIELSPAAGVLNYGQGLFEGTKAYRKENGRVLLFRPEQNAIRMKIGAERMCMASPSIEHFVHALKQTVLANKRWIPPPGKGSLYLRPLLLGTGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLHVEENFDRASRRGTGNVKTISNYAPVLMAQTTAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCIATPATNGTILSGITRKSVIEIAGDLGYQVEERAVGVDELIEADEVFCTGTAVGVAPVGSITYQDKR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03185 324 ProSitePatterns Aminotransferases class-IV signature. 244 273 IPR018300 GO:0003824
Vimu10g03185 324 FunFam Branched-chain-amino-acid aminotransferase 14 187 - -
Vimu10g03185 324 NCBIfam branched-chain-amino-acid transaminase 56 323 IPR005786 GO:0004084|GO:0009081
Vimu10g03185 324 CDD BCAT_beta_family 67 324 IPR033939 GO:0004084|GO:0009081
Vimu10g03185 324 PANTHER AMINO ACID AMINOTRANSFERASE 19 324 IPR005786 GO:0004084|GO:0009081
Vimu10g03185 324 Pfam Amino-transferase class IV 80 318 IPR001544 GO:0003824
Vimu10g03185 324 Gene3D - 188 324 IPR043132 -
Vimu10g03185 324 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 21 322 IPR036038 GO:0003824
Vimu10g03185 324 PIRSF BCAT1 13 324 IPR005786 GO:0004084|GO:0009081
Vimu10g03185 324 Gene3D - 10 187 IPR043131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03185 Vimu-Chr10 42368180 42371903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03185 K00826 - gmx:100782644 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03185 10 42368180 42371903 Vimu10g03185 10 42368180 42371903 ECH