Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03165 ATGGCGGACGAAACTCACTATTCATCTCCCAACGACTCTGCGCCCCTCAAACGCAAGTATGAAGACCAATCCTCCGATAGACCCACTGGCTTCTCGGCAGGTCCGGCCACCGGCATAGAGCTCGCTAAGCAGCGTGCTCAAGAAGTCGCCGCCCGCCTCCTCAGCGTTGCTCCTCCTCCCCCGCTCGACGCCAAGCGTCCCAAATCCGATAACGGTGCTCCTACCTCCGGCTTCGATTCTTACGTCTCCTATAGTCACCAAGGAACGAGCAAGAAGATTGATATCCCTAACGGCCGGGTTGGTGTGATTATTGGCAAAAGTGGAGAGACCATTAAATATCTTCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGACCCTAATTCTGCTACCAGGACTGTTGAGCTTATGGGCACTCCCGAGGCAATTGCCTCTGCAGAGAAACTCATTAATGAAGTTCTTGCTGAGAATCGACTTAGAAATCCTTCAATGTCTGGTGGGTATCCTCAGCAAGGCTACCAATCTCGTCCACCCTCTAACTGGGGTCCTCCCGCACCAATGCAGCAACCTGGTTATGGCTATGTGCAACCTGGAGCATATTCTGGTCCATCACCTCAATATAACATGCCTCAGCCACCGTATTCAGGCTATCCTCCCCAACAACCAGGTGGATATTCCACCAACTGGGACCAGTCTTCTGCACCACCTCACCAACAGTCTACTCATGCTGGTGGCTATGATTACTATAGTCAACAACCACAGCAACCGCAAAATCCTGGAGGTCCTGCACCTCCAGCTGATGGCTCTGCATACAATTATAGTCAACCACCTTCATCTGCTTACAGCCAACCGGGACAGGGTTATACTCAGGACAGCTATAATGCTTATAATGCACAATCTCATTCGGGGTATGGACAACCACCTACATATGATCAACAACAAAGTTATGGCTCCGTTACTGGCTATGGTAGTGGGAATAACCCGGCACAAGAGGGCCACACTTCGGGCTATGCATCCCAGGGAGATTCAGCCCCAGCTCCGTCTACCCAACCGATTGCACAGCAAGGTTATCCTACCAGCCAACAGCCCAGCTCAAACACTTCCAACTACCCACCTCAGGGAACTCCTCAGTCAGGTTATGGCGTTCCCCCTACATCCCAAGCTGCTTATGGAAGTCAACCACAACCAGGTTATGGTCCTGGTTATGGAGCCCCTCAATCTCAGAAACCAAGTGGCAATCCTCCTGTTTATGGACAGTCGCAGTCACCCAGTGCAGTAGGAGGCTATGGTCAGTCAGCATATCCTGCGCAGCCTCCACCTTCAGGTTATACTCAACCCCAAGCAGAAACTGGTGCTCAGAGAGCACCTCCATCGGGCTATGGTGCAGGGCAACCAGGTTATGGTTCTCAAACATATGGTGCACCTCAGGGAGGCCAGCCTGCTTATGGTCAGGCGCCGCCTCCATACAGCAACAGTTCTTATGGTGCTGGTTATACTCAGGCTCCGGCCTATACTGGCGATGGTAATGGCAGTGGGAATACTCAGCCTCCCCAAACAACCGCTGCTAAAACTTCGCCCCAGACTTGA 1602 0.5218 MADETHYSSPNDSAPLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLSVAPPPPLDAKRPKSDNGAPTSGFDSYVSYSHQGTSKKIDIPNGRVGVIIGKSGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGTPEAIASAEKLINEVLAENRLRNPSMSGGYPQQGYQSRPPSNWGPPAPMQQPGYGYVQPGAYSGPSPQYNMPQPPYSGYPPQQPGGYSTNWDQSSAPPHQQSTHAGGYDYYSQQPQQPQNPGGPAPPADGSAYNYSQPPSSAYSQPGQGYTQDSYNAYNAQSHSGYGQPPTYDQQQSYGSVTGYGSGNNPAQEGHTSGYASQGDSAPAPSTQPIAQQGYPTSQQPSSNTSNYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSAYPAQPPPSGYTQPQAETGAQRAPPSGYGAGQPGYGSQTYGAPQGGQPAYGQAPPPYSNSSYGAGYTQAPAYTGDGNGSGNTQPPQTTAAKTSPQT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03165 533 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 75 161 - -
Vimu10g03165 533 MobiDBLite consensus disorder prediction 168 183 - -
Vimu10g03165 533 MobiDBLite consensus disorder prediction 490 533 - -
Vimu10g03165 533 ProSiteProfiles Type-1 KH domain profile. 88 155 - -
Vimu10g03165 533 Pfam KH domain 92 157 IPR004088 GO:0003723
Vimu10g03165 533 MobiDBLite consensus disorder prediction 165 533 - -
Vimu10g03165 533 SMART kh_6 87 160 IPR004087 GO:0003676
Vimu10g03165 533 MobiDBLite consensus disorder prediction 225 261 - -
Vimu10g03165 533 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 89 162 IPR036612 GO:0003723
Vimu10g03165 533 MobiDBLite consensus disorder prediction 276 398 - -
Vimu10g03165 533 Gene3D K Homology domain, type 1 82 184 IPR036612 GO:0003723
Vimu10g03165 533 MobiDBLite consensus disorder prediction 1 82 - -
Vimu10g03165 533 MobiDBLite consensus disorder prediction 411 433 - -
Vimu10g03165 533 FunFam KH domain-containing protein 82 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03165 Vimu-Chr10 42216989 42221987 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03165 K13210 - gmx:100813135 525.398