Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03164 ATGGCGGAGGAAGCACAGTATTCATCGGGAACGGAGTCGGCATCCCTCAAGCGCAAGTACGAAGACCAATCCTCCGACAGACCCACCGGATTCTCTGCGGGCCCCGCCACCGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTCGCCGCTCGCCTCCTCAGTGTCACTCCTCCTCCCCCGCTCGATGCCAAGCGTCCCAAACCCGATAACGGTGCTCCTTCCTCCGGTTTCGATTCTTACGATGCGAAGCCTCAGTACTCGGCCGTTCCCCCCGTCTCCTACAGTCATCAAGGAACGAGCCAGAAGATTGATATCCCTAACGGCAGGGTTGGTGTTATTATTGGCAAAGGTGGAGAGACCATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGACCCTAATTCTACTACCAGGACCGTTGAGCTTATGGGCACTCCCGAGGCAATCGCTTCTGCAGAGAAACTCATTAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGCATCGTTGCTCGAAGACTGACCGGACAAGCTGGGTCGGATGAATTTGTCATGAGAATTCCGAATAATAAGGTTGGCCTTATAATTGGCAAAGGTGGAGAAACCATAAAGAATATGCAAGCTTCTACTGGTGCACGGATTCAGGTGATACCTCTGCATCTTCCTCCAGGTGACACATCAACTGAAAGAACTTTGAAAATTGATGGGACACCTGAGCAAATCGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGTGGCGAGGCATATCTGTCTGGTTATGCCAAGGTTAGTGTCTATTGGACCATTGGTGACACCAACATGAATCCCTTTGTTGGTGTTCCCTCAGCATGCCCTGGTATGGTTCTAAATCTCAGATATTTATTATCAAGGGCATTCATATCTCAGCAAGAACCTTTATGTACTTGGAATAGTATTTTATCCTCGGATCTTATACATGACTTTCATTTGGCATCAAATCGTCTTAGAAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAGCCTGGTTATGGTTATATGCAGCCTGGTGCATATTCTGGTCCATCACCTCAGTATAATATGCCTCAACCACCATATGCAGGCTATCCTCCCCAACAACCAGGTGGATATTCCACTAGCTGGGACCAGTCTTCTGCACCACCTCACCAACAGTCTTCTCATGCTGGCGGCTATGATTACTATAGTCAACAGCCACAGCAACCGCAAAATCCTGGTGGGCCAGCACCTCCAGGGGATAGCTCTACATACAGTTACAGTCAACCACCTTCATCTGGTTATAGCCAACCGGGACAGGGTTATTCTCAGGACAGCTATAATGCATACAATGCACAGTCTCAATCAGGGTATGGACAGCCACAGACATATGATCAGCAGCAAGGCTATGGCTCAGCTACTACTGGCTATGGTAGTGGGAATAACCAAACACAAGAGGGCCACACTGCAAGCTACGCATCGCAGGGAGATTCAGGCCCAGCTCCATCTACCCAACCGACCACCATCGCACAACAAGGTTATCCTACCAGCCAACAGCCCAGCTCAAACACTGCCAACTACCCACCTCAGGGAACTCCTCAGTCAGGTTATGGGGTTCCCCCGACATCCCAAGCTGCTTATGGAAGTCAACCACAGCCAGGTTATGGACCTGGTTATGGAGCCCCTCAATCTCAGAAACCAAGTGGCAATCCTCCTGTTTATGGACAGTCTCAGTCACCCAGTGCGGTAGGAGGCTATGGTCAGTCAGCATATCCTGCTCAGCCTCCACCTTCCGGTTATACTCAACCCCAAGCAGAAACTGGTTCTCAGAGAGCACCTCCGTCGGGCTATGGTGCAGGGCAACCAGGTTATGGTTCTCAAACATATGGTGCACCTCAGGGTGGCCAGCCTGCTTATGGTCAGGTACCACCTCCTTACAGCAACAGTTCTTACGGTGCTGGTTATACTCAGGCTCCCGCATATACTGCCGATGGTAATGGCAGTGGAAATACGCAGCCTCCTCAGACTGCTGTTGCTAAAGCATCGCCTCAGAGTTGA 2139 0.5058 MAEEAQYSSGTESASLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLSVTPPPPLDAKRPKPDNGAPSSGFDSYDAKPQYSAVPPVSYSHQGTSQKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKELVNQIISGEAYLSGYAKVSVYWTIGDTNMNPFVGVPSACPGMVLNLRYLLSRAFISQQEPLCTWNSILSSDLIHDFHLASNRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYMQPGAYSGPSPQYNMPQPPYAGYPPQQPGGYSTSWDQSSAPPHQQSSHAGGYDYYSQQPQQPQNPGGPAPPGDSSTYSYSQPPSSGYSQPGQGYSQDSYNAYNAQSQSGYGQPQTYDQQQGYGSATTGYGSGNNQTQEGHTASYASQGDSGPAPSTQPTTIAQQGYPTSQQPSSNTANYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSAYPAQPPPSGYTQPQAETGSQRAPPSGYGAGQPGYGSQTYGAPQGGQPAYGQVPPPYSNSSYGAGYTQAPAYTADGNGSGNTQPPQTAVAKASPQS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03164 712 MobiDBLite consensus disorder prediction 1 101 - -
Vimu10g03164 712 MobiDBLite consensus disorder prediction 669 712 - -
Vimu10g03164 712 MobiDBLite consensus disorder prediction 402 437 - -
Vimu10g03164 712 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Vimu10g03164 712 MobiDBLite consensus disorder prediction 344 712 - -
Vimu10g03164 712 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 100 177 IPR036612 GO:0003723
Vimu10g03164 712 Gene3D K Homology domain, type 1 94 190 IPR036612 GO:0003723
Vimu10g03164 712 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 90 530 - -
Vimu10g03164 712 SMART kh_6 190 264 IPR004087 GO:0003676
Vimu10g03164 712 SMART kh_6 98 171 IPR004087 GO:0003676
Vimu10g03164 712 Pfam KH domain 195 260 IPR004088 GO:0003723
Vimu10g03164 712 Pfam KH domain 102 168 IPR004088 GO:0003723
Vimu10g03164 712 MobiDBLite consensus disorder prediction 445 577 - -
Vimu10g03164 712 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 190 270 IPR036612 GO:0003723
Vimu10g03164 712 Gene3D K Homology domain, type 1 193 266 IPR036612 GO:0003723
Vimu10g03164 712 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Vimu10g03164 712 MobiDBLite consensus disorder prediction 590 612 - -
Vimu10g03164 712 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03164 Vimu-Chr10 42202669 42207685 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03164 K13210 - gmx:100797476 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03164 10 42202669 42207685 Vimu10g03164 10 42202669 42207685 ECH