Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03140 ATGGATTCTTCGCAAGGATCTACCATTGCTGGTTTCGTGGACAATGCATCCATTCAGAGGAAACAGTCTAGTTTTGATGGCGTTCCTGTGTATGTCAAGGAGCTAATTGCCGGAGGCTTTGCTGGTGCGCTTTCTAAGACCGCTGTTGCACCTCTCGAACGAGTCAAGATACTTTGGCAGATGTACATGATTTACGATGTTGTTACTTTCCTTTTGCCATCTTCACTTCGTGAGAAAGTTCTTAATGGGGGAAACGGAGCTGGTGTTATTCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCAATGTTAGGTTCGGCAGGCTCTGCTGCAGGGGGAACTTCGGTTTTATGTACCTACCCGTTGGATCTTGCTCGTACCAAACTTGCTTACCAGGGTGATTTAATGAATCGTGATATCTTGATTCCAATTTGCATAGTCCATGGGACGGCAAATTTTCCTATCATTTGGGGATTGCTTCATTTGGGCTGCAAGTTTGGAGATTCCCCCTCAAAGCATATTTGTGATCAGGGACAAGACCATTCTCTCCCGCCTGCAAGGTCCTTGTATGTTGAAAATGATAAAATTGCCCCTTATTTAATATACTTGTATGCACAAGTGGTGGACACAAGAGAAGGTATCAAAGATGGTATGAGAGGAGTTCAACCTACACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAGGCGGAGCCCGTGGACTTTATAGAGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTACGAAAAACTGAAGACTTACCTTCCAGAAGAACATCAAAAGTCCATTGTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGCCTGCAGAACGCTACTCATGAGAATGTCAGATATAAAAATACCATTGATGGACTTAGGACGATTGTTCGTAATCAAGGATGGAGGCAGCTCTTTCATGGCATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCTCAGCAGCAAAAGTCTCGATCAGTTTCGGCAGCATGA 1182 0.4357 MDSSQGSTIAGFVDNASIQRKQSSFDGVPVYVKELIAGGFAGALSKTAVAPLERVKILWQMYMIYDVVTFLLPSSLREKVLNGGNGAGVIRIVPYAALHFMTYERYKSWILNNYPMLGSAGSAAGGTSVLCTYPLDLARTKLAYQGDLMNRDILIPICIVHGTANFPIIWGLLHLGCKFGDSPSKHICDQGQDHSLPPARSLYVENDKIAPYLIYLYAQVVDTREGIKDGMRGVQPTHNGIKGVLTSVYKEGGARGLYRGAGPTLTGILPYAGLKFYMYEKLKTYLPEEHQKSIVMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNATHENVRYKNTIDGLRTIVRNQGWRQLFHGIVPSAAISFTTYDMMKSWLGIPPQQQKSRSVSAA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03140 393 Gene3D Mitochondrial carrier domain 29 380 IPR023395 -
Vimu10g03140 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 109 IPR018108 -
Vimu10g03140 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 292 384 IPR018108 -
Vimu10g03140 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 285 IPR018108 -
Vimu10g03140 393 SUPERFAMILY Mitochondrial carrier 32 373 IPR023395 -
Vimu10g03140 393 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Vimu10g03140 393 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Vimu10g03140 393 PRINTS Mitochondrial carrier protein signature 301 323 IPR002067 GO:0055085
Vimu10g03140 393 PANTHER SOLUTE CARRIER FAMILY 25 237 380 - -
Vimu10g03140 393 Pfam Mitochondrial carrier protein 237 288 IPR018108 -
Vimu10g03140 393 Pfam Mitochondrial carrier protein 31 113 IPR018108 -
Vimu10g03140 393 Pfam Mitochondrial carrier protein 292 378 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03140 Vimu-Chr10 42063312 42066660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03140 219 385 Organic Solute Cotransporters AT1G14560 65.169 1.13e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03140 - - vum:124826084 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03140 10 42063312 42066660 Vimu10g03140 10 42063312 42066660 ECH