Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03123 ATGGCGGATCCCTATTACCCATATAGTGTTCCGGCAGCTGCCGACGGAGCAAGTATTGCGAGGACCAGCTTTGCTGGATATATTCCAACCGAGCCTTCAAATTCTACTGAACTGCGGGGCACTGGATCAGATTACCTGCAAAGAGACATAGGCTTGTTTTATAGTGCAGATGATACTTTGGGATCTAGGGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTCGCAGATCCTGACCTGACTAAAAAACGAGATATGACACCATTAGGCATTAGTCATGGTGTTTCTGATGTGAACAGTGAAAGAGCATCATCTAAAAACACTTATGATGGTCTGCCTATTTCAGCAGCGGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAATAACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGCCCCTTTATTGGCTATAAGGATATTAGAGTTGTTCACAAGGAGCCTAGACGTAGCGATGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCGAAATGTGCTCTCACTGCCCTGGAAGCCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCGCCAACCCTAAAAATACAGTTTGCGCACTTTCCATTCCGTCTACCGTCTGATCATGGCAACAGCATAACAACATGA 663 0.451 MADPYYPYSVPAAADGASIARTSFAGYIPTEPSNSTELRGTGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPDLTKKRDMTPLGISHGVSDVNSERASSKNTYDGLPISAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVVHKEPRRSDDKAMTLCFVEFVDSKCALTALEALQGYKFDDKKPDSPTLKIQFAHFPFRLPSDHGNSITT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03123 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 193 IPR000504 GO:0003723
Vimu10g03123 220 Gene3D - 115 206 IPR012677 -
Vimu10g03123 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 206 IPR000504 GO:0003723
Vimu10g03123 220 CDD RRM_AtNSRA_like 119 204 - -
Vimu10g03123 220 SMART rrm1_1 121 202 IPR000504 GO:0003723
Vimu10g03123 220 MobiDBLite consensus disorder prediction 70 102 - -
Vimu10g03123 220 SUPERFAMILY RNA-binding domain, RBD 90 193 IPR035979 GO:0003676
Vimu10g03123 220 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 71 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03123 Vimu-Chr10 41948571 41952139 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03123 - - gmx:100809186 402.519