LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03122	TTGTGGAACTGTAGGTGCTACCGTTCTTGCTTCTGCACTGACGGTTCCCTTGCGGCTTCCATGGAAGGGATGATGCAGCTTGCGTATGATGCAACGGTGAAGCTCATGCTGTCTGCACTTGAGCGCAACCTGCTCCCTGACGCCGTCACCAGGAGACTCACGCGCCTCCTTTTGGCTGCTCGCCTTCGCTCTTCTTCCACCACATCCTCGGAGATTCAGCTTTTCAACCTCCTCCACTTCGCACATTTGAACAATTTGACCAGGAATTTCATATCTCACGCTCTTTCAGCTTTACGAGAGATGCCCATAGCAATCAACACCGAGAAGCCAAAATCTCAACATTATGAACTACCAACCGCTTTCTTCAAGCTCGTCCTTGGAAGCAATCTCAAATACAGCTCTTGCTATTTCCCTTCTGCCTCAACGACGCTGGAAGATGCTGAAGAAGCAATGTTGAAACTGTACTGCGACAGATCAAACCTGAAAGATGGTCATACAGTACTTGATGTGGGATGTGGTTGGGGATCGCTGGCATTATACATTGCCAAGAAGTACATTAACTGCAGAGTTACAGGAATCTGCAATTCCACAACTCAAAAGGCTTACATTGAGGAAAAGTGCCGGGATCTTCAGCTGCAAAATATCAATATTATAGTTGCTGATATTAGCACGTTTGAAATGGAGGCTTCTTACGACAGAATATTTTCCATAGAAATGTTTGAGCATATGAAGAACTACAAAGACCTTCTGAACAAGATATCCAAATGGATGAAAGAAGATAGCCTTTTATTTGTGCATTACTTCTGCCACAAATCATTTGCCTACCACTTTGAGGACAAAAACGAAGATGACTGGATTACAAGATACTTCTTTACTGGAGGAACCATGCCTTCAGCAAATCTACTTCTTTATTTTCAAGATGATGTTACAGTCATCAACCATTGGCTGGTAAATGGTAAACACTACGCACAGACCAGTGAAGAATGGCTGAAAAGGATGGACCAGAGAATGACTTACATCAAGCCAATTATGCAATCAACGTATGGCAATGATTCAGCTACCAAGTGGATTGCCTATTGGAGAACATTCTTCATAGCTGTGGCGGAACTCTTCGGATATAATAACGGTGAAGAATGGATGGTTGCACACTTTCTTTTCAAAAAGAAATGA	1170	0.4333	MWNCRCYRSCFCTDGSLAASMEGMMQLAYDATVKLMLSALERNLLPDAVTRRLTRLLLAARLRSSSTTSSEIQLFNLLHFAHLNNLTRNFISHALSALREMPIAINTEKPKSQHYELPTAFFKLVLGSNLKYSSCYFPSASTTLEDAEEAMLKLYCDRSNLKDGHTVLDVGCGWGSLALYIAKKYINCRVTGICNSTTQKAYIEEKCRDLQLQNINIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLNKISKWMKEDSLLFVHYFCHKSFAYHFEDKNEDDWITRYFFTGGTMPSANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDQRMTYIKPIMQSTYGNDSATKWIAYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03122	389	PANTHER	-	21	389	-	-
	Vimu10g03122	389	FunFam	Cation-transporting ATPase	103	383	-	-
	Vimu10g03122	389	CDD	AdoMet_MTases	166	268	-	-
	Vimu10g03122	389	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	112	384	IPR029063	-
	Vimu10g03122	389	Pfam	Mycolic acid cyclopropane synthetase	111	345	-	-
	Vimu10g03122	389	Gene3D	Vaccinia Virus protein VP39	105	383	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03122	Vimu-Chr10	41941864	41944638	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g03122	112	364	Acyl Lipid Metabolism Gene Families	AT3G23510	29.457	4.46e-25	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03122	-		-	var:108330834	652.514

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03122	10	41941864	41944638	Vimu10g03122	10	41941864	41944638	ECH