Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03118 ATGAAGAAGGCGAAGAAGAGTGTGGAAGAAAATGGGGGAAAGCTCAATGGTGCTGAGAGAGAGGCAGCGAACGTGTTGAGAGTGGTTCTCGAAGGAGACTCTAAGCGCCGCGCTCTTGCCTCCATCAAATCCCTCATCTATCAACCTTCCGTTAGGAACAAGAAGGGCACCTTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATCATCAAAGATGTCTTGGAAGCTGCTTCCATTCTCAACACCAAGTGGAAGCAGAGGCAACGGGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGCAAGGCGGTTTCACTAGTTGGTGATGCAGAGAAGTACCTTATGAGACACGAAGGCGCTCTGCGTTCGACTCTTAAACAGCTTTTGTTACAGAGGAATGTGAAGACTGTTAAACAGTTGATTGCTCTGCATGAAATTCCAGATGTTTCTGTACCTCGGTATGTTCGTGTGAATACGCTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAATTACTCGGTTCAAAAAGATAATCTGTTGGCTGAGTTACTGATACTCCCAAAAGGCACTGATTTACATGATCACCCTCTTGTTAAAAACGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCAATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATTGATGCGTGTGCAGCACCGGGAAACAAAACTATTCACCTTGCTGCCCTTATGAAGAGTAGGGGAAAGATTGTAGCATGTGAGCTGAAAAAAGAAAGAGTTAAGCGATTGAAAGACACTATAAAGCTATCTGGGGCTTCTAACTTGACCCCAAGTTCAGACATACAAGTCCTGAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCATATTCTAAGGTGAAAGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTTCTGCCTCAAGATTGGACCATCTGCTCCCATCTAAAACAGCAGTTCCAGCTCTTGAAAGAATTGTCTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTGATCAAATCTGTTCTTCCCATTGCCGAATCATACGGATTTCAATTGGCCAAGCCCTTCCCCGAGTGGCAATGCCGTGGTCTTCCGGTGTTTGAAGGCTCTGAATGCCTGATTCGGACAGATCCTGCTAAGCATGGCGAGGGTTTCTTCATTGCTTTGTTTGTTAGGAAAGATGCATCTTCGGAGTGTTCAAATAAAAACGAAACTAGAATTTCCCGTAGCACTCCCGGAATTAAAAACGCACAAAGAAAGAAGAAACGTATACCGTTTATTAGCACGAACCCATTCAAAATGTGGTTATATGATCAACTGATGTAG 1380 0.4348 MKKAKKSVEENGGKLNGAEREAANVLRVVLEGDSKRRALASIKSLIYQPSVRNKKGTFALICQTLKHLPIIKDVLEAASILNTKWKQRQRELVYIIVYDILFGKAVSLVGDAEKYLMRHEGALRSTLKQLLLQRNVKTVKQLIALHEIPDVSVPRYVRVNTLKLDVDSALLELQKNYSVQKDNLLAELLILPKGTDLHDHPLVKNGSIFMQGKASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMKSRGKIVACELKKERVKRLKDTIKLSGASNLTPSSDIQVLNEDFLNINPKDPSYSKVKAILLDPSCSGSGTSASRLDHLLPSKTAVPALERIVYSTCSINQIENEDVIKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGSECLIRTDPAKHGEGFFIALFVRKDASSECSNKNETRISRSTPGIKNAQRKKKRIPFISTNPFKMWLYDQLM 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03118 459 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 411 IPR029063 -
Vimu10g03118 459 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 22 411 IPR023267 GO:0001510
Vimu10g03118 459 Pfam 16S rRNA methyltransferase RsmB/F 221 320 IPR001678 GO:0008168
Vimu10g03118 459 Gene3D Sun protein; domain 3 146 210 - -
Vimu10g03118 459 Gene3D Vaccinia Virus protein VP39 211 418 IPR029063 -
Vimu10g03118 459 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 145 411 IPR001678 GO:0008168
Vimu10g03118 459 PRINTS RNA (C5-cytosine) methyltransferase signature 231 241 IPR023267 GO:0001510
Vimu10g03118 459 PRINTS RNA (C5-cytosine) methyltransferase signature 202 216 IPR023267 GO:0001510
Vimu10g03118 459 PRINTS RNA (C5-cytosine) methyltransferase signature 337 353 IPR023267 GO:0001510
Vimu10g03118 459 PRINTS RNA (C5-cytosine) methyltransferase signature 393 410 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03118 Vimu-Chr10 41923744 41928849 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03118 K15264 - gmx:100775620 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03118 10 41923744 41928849 Vimu10g03118 10 41923744 41928849 ECH