Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03117 ATGGGAATTAAGCACGGAACCTCTCGAACTTCCTACTATTATTTTGTGAATCTTTCTGGAACCTCCCATCTTAATCTTGTCACCTTTTATAAATGCCCAAAATGCACTCAGGAGACTCTGCACAGAATCGAAACCACAGAAAACAAAATCACATTAGGAGCAGTTGTTTATAGGAGAGAAGAAGGAAAGAAAATGGATATCAGGCTGATGGAATTGGACTCTCCCTTGTTCTCCACTTTGAACCGAATCATGGATCTGACGGAGGACGCAGAGAAGAACTTAAGCGCTCCCACGAGGACGTACGTGCGAGATGCAAAGGCAATGGCTGCCACCTCTGCTGATGTGAAAGAGTATCCTAACTCTTACGTGTTTGTAATCGACATGCCTGGCCTGAAATCTGGGGACATCAAGGTGCAGGTGGAGGAGGACAACGTGCTGATCATTAGCGGTGAAAGGAAGAGAGAGGAGGAGAAAGAAGGAGCTAAGTATTTGAGGATGGAGAGAAGAGTGGGAAAATTCATGCGCAAGTTTACACTTCCGGATAATGCAAATACTGATGCCATATCTGCCATCTGTCAGGATGGTGTGCTTACCGTCACCATCAACAAGTTGCCTCCTCCTGAACCCAAGAAGCCCAAGACTATTGAGGTCAAAATTGGTTAA 663 0.4525 MGIKHGTSRTSYYYFVNLSGTSHLNLVTFYKCPKCTQETLHRIETTENKITLGAVVYRREEGKKMDIRLMELDSPLFSTLNRIMDLTEDAEKNLSAPTRTYVRDAKAMAATSADVKEYPNSYVFVIDMPGLKSGDIKVQVEEDNVLIISGERKREEEKEGAKYLRMERRVGKFMRKFTLPDNANTDAISAICQDGVLTVTINKLPPPEPKKPKTIEVKIG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03117 220 FunFam 17.3 kDa class II heat shock protein-like 75 219 - -
Vimu10g03117 220 Pfam Hsp20/alpha crystallin family 114 218 IPR002068 -
Vimu10g03117 220 SUPERFAMILY HSP20-like chaperones 80 212 IPR008978 -
Vimu10g03117 220 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 76 218 IPR031107 -
Vimu10g03117 220 Gene3D - 67 219 IPR008978 -
Vimu10g03117 220 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 104 218 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03117 Vimu-Chr10 41922302 41922964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03117 K13993 - gmx:111605749 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03117 10 41922302 41922964 Vimu10g03117 10 41922302 41922964 ECH