Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03110 ATGGCTCGGGCATTTGGAAAAGCCATAGCAAAACCTTCTTCTTCTTCTTCTTCTTCATCCAACATTCCAAATCGAAATCTCTGCCTCGTAACATCCATCACCTCAATCCTTCAAAATCTAAATCCCCAAATCCCAGATTTCTCATCTCTCAATGAATTTTCTCCTCACCTCAGCCCGAATTTGGTCATTCAGGTGATCAAGAAACAAAAGAACCCACACCACGCTCTTCAATTCTTCAACTGGGCCTCCAACCCCAACCCCAACCCTAAGAACTACTCCCACACCCCCTTATGCTACGCCGCCATCACCGACCTCTTGCTCTCCCACTCCCTCTTCTCCACCGCTTACTCCCTTCTTCACCACTCCAACAAACTCTCCCACTTCCTTATCTGCAGATTCATCAACGCTCTCGGTCACTGCGGCGATATCAGGGGCGCCGTTCACTGGTTCCACAAAGCAAAAAACTTGGGAAGAGAACACTGCGTCTACTCATGCAACGCCATCTTGGGCGTCCTCGTCAGGGCCAACCGTGTCAATTTTGCCAAGGCCATCTACAATCAGGTTCTCTCGGAAGCTGTGGTAGAACCCGATGTTTACACTCACACCACAATGATTCGTGGGTTTTGCAAAGTGGGGATGGTCGAGAGTGCGCGCAAGGTGTTCGACGAAATGCGCTGCGAACGCAACATTGTTACTTACAACACTTTGATCCACGGGTTTTGTAAGAAGGGTGACATGGAGGGTGCGCGGTGGGTTTTTGACAGATTGTTGGAGAGTAAGAGTTGTGAGCCGGATGTGGTGAGTTTCACCACTTTGATTGATGGGTATTCGAAGAGAGGTGAATTCAAAAAGGCGGTGGAGTGTCTGAAGCAGATGACGGAACGAGGGTGTTCTCCGAATGTTGTGACCTACAATGCCTTGGTTGAAGGTCTTTGCTTGAGCGGAGAAGTGGATGAGGCAAAGATGATGATGGGTAGGATGCGGTTGAATGGTTTGAAAGACAATGTCGCCACAAACACTAGCTTGTTGAAGGGGTTGTGTATTGTGGGAAAGTCTGATGATGCTTTTAAGCATTTCAGGGAAATGGCTGGTTGGGGGATGAAGCCGGATGTGAAAGCTTATGGGGTTGTTGTGAATGAGTATTGCAAGATTGGAAAACCAAGAGAAGCAGTCTCACTTCTGAGAGAAATGGTGACGAGGGGTGTTAAGCCAAGTGTGTCAAGCTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGAGTTCTTCTTTTGAAGCAGATGAGTCAGATGGGATGCTCACCCAACTTCTTGTCATATTGCATATTGGTATGTGGCCTCTGTAGAGTGAAGAGTAGGATGCAGGCAGTTGAAGAGCTTGTTTCAGACATGCTTCAGAATGGGCATAACCTGGATGCCACTATGTATAACTGCTTACTTCAGGGATATTGTGAAGACGGGGATGAAGAAATGGCACTAAAGACATATTATGACATTATGAATAAGAACTTTGTAATCAAGCAAGACGTTTTCAGCACTTTTGTGAAGTTGATGTGTGCAAAGGGGAAATTGAAAGAGGGGGATACAGTCTTTGAGGGATGCTTGCTCGGGGGATTCCAGTTAAATGGGAAAGTTGAGGCTAATGCAACAGAGGAACACTGA 1674 0.4671 MARAFGKAIAKPSSSSSSSSNIPNRNLCLVTSITSILQNLNPQIPDFSSLNEFSPHLSPNLVIQVIKKQKNPHHALQFFNWASNPNPNPKNYSHTPLCYAAITDLLLSHSLFSTAYSLLHHSNKLSHFLICRFINALGHCGDIRGAVHWFHKAKNLGREHCVYSCNAILGVLVRANRVNFAKAIYNQVLSEAVVEPDVYTHTTMIRGFCKVGMVESARKVFDEMRCERNIVTYNTLIHGFCKKGDMEGARWVFDRLLESKSCEPDVVSFTTLIDGYSKRGEFKKAVECLKQMTERGCSPNVVTYNALVEGLCLSGEVDEAKMMMGRMRLNGLKDNVATNTSLLKGLCIVGKSDDAFKHFREMAGWGMKPDVKAYGVVVNEYCKIGKPREAVSLLREMVTRGVKPSVSSFNAVFRVLVDEGKIDEGVLLLKQMSQMGCSPNFLSYCILVCGLCRVKSRMQAVEELVSDMLQNGHNLDATMYNCLLQGYCEDGDEEMALKTYYDIMNKNFVIKQDVFSTFVKLMCAKGKLKEGDTVFEGCLLGGFQLNGKVEANATEEH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03110 557 SUPERFAMILY TPR-like 64 403 IPR011990 GO:0005515
Vimu10g03110 557 Gene3D Tetratricopeptide repeat domain 118 244 IPR011990 GO:0005515
Vimu10g03110 557 Gene3D Tetratricopeptide repeat domain 245 350 IPR011990 GO:0005515
Vimu10g03110 557 Gene3D Tetratricopeptide repeat domain 351 456 IPR011990 GO:0005515
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Vimu10g03110 557 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g03110 557 Pfam PPR repeat 479 507 IPR002885 -
Vimu10g03110 557 Pfam PPR repeat family 264 312 IPR002885 -
Vimu10g03110 557 Pfam PPR repeat family 404 453 IPR002885 -
Vimu10g03110 557 Pfam PPR repeat family 335 383 IPR002885 -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 264 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 479 509 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 199 227 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 231 266 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 302 332 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 340 371 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 408 440 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 267 301 IPR002885 -
Vimu10g03110 557 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Vimu10g03110 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 38 362 - -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Vimu10g03110 557 Pfam PPR repeat 194 225 IPR002885 -
Vimu10g03110 557 Pfam PPR repeat 226 254 IPR002885 -
Vimu10g03110 557 Gene3D Tetratricopeptide repeat domain 457 539 IPR011990 GO:0005515
Vimu10g03110 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03110 Vimu-Chr10 41862210 41864320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03110 25 557 Glycosyltransferase AT1G05670 25.719 5.80e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03110 - - gmx:100802054 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03110 10 41862210 41864320 Vimu10g03110 10 41862210 41864320 ECH