Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03108 TTGTTCCCGCTCACTCACGTCACGCGCTTTGTTCTCTTTCAGTTCAAAATTGGTCTCTGTCAACTCTCCGTCACTCCCGACAAAGATAGGAACATCGCCCACGCGCGCTCCGCCATTCAGGACGCTGCATCCAAGGGCGCTCAGCTTGTTCTTTTGCCTGAAATTTGGAACAGTCCTTATTCCAATGACAGTTTCCCTGTCTACGCTGAGGATATTGACGCCGGTGCCGATGCTTCTCCTTCCACCGCCATGCTCTCTGAACTCTCTCGTTTCTTGAAAATCACCATCGTCGGTGGTTCCATACCGGAACTTTCTGGGGGTCGCTTGTACAACACTTGTTGCGTTTTCGGGACTGATGGGAAGCTGCTCGCCAAGCACCGCAAGATACATCTTTTTGATATTGACATCCCTGGGAAGATTACATTTATCGAGTCAAAAACTCTTACTGCTGGGGAGACTCCGACGATTGTTGACACAGAGGTTGGACGCATTGGTATAGGCATTTGTTATGACATTCGGTTTCCAGAACTAGCAATGATATATGCTGCTAGAGGTGCTCATTTGCTCTGCTATCCTGGGGCATTTAACATGACAACCGGACCATTACATTGGGAGTTATTGCAGAGGGCAAGGGCTACAGATAATCAGTTGTATGTGGCTACCTGTTCGCCTGCTCGGGATACAGGATCTGGTTATGTGGCCTGGGGCCACTCTACTCTTGTAGGGCCATTTGGAGAAGTTCTGGCTACTACAGAACACGATGAGGCTATCATCATTGCAGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAATCTCCCTGTAACTAAGCAAAGACGAGGTGATCTTTACCAGGTGGTTGATTTTCAGAGGCTGAATTCCCAGTGA 891 0.4804 MFPLTHVTRFVLFQFKIGLCQLSVTPDKDRNIAHARSAIQDAASKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGADASPSTAMLSELSRFLKITIVGGSIPELSGGRLYNTCCVFGTDGKLLAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDTGSGYVAWGHSTLVGPFGEVLATTEHDEAIIIAEIDYSILEQRRTNLPVTKQRRGDLYQVVDFQRLNSQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03108 296 ProSitePatterns Uncharacterized protein family UPF0012 signature. 165 185 IPR001110 -
Vimu10g03108 296 FunFam Omega-amidase chloroplastic 12 290 - -
Vimu10g03108 296 PANTHER NITRILASE-RELATED 14 287 - -
Vimu10g03108 296 Pfam Carbon-nitrogen hydrolase 17 267 IPR003010 GO:0006807
Vimu10g03108 296 CDD nit 16 281 IPR045254 GO:0016811
Vimu10g03108 296 SUPERFAMILY Carbon-nitrogen hydrolase 15 287 IPR036526 -
Vimu10g03108 296 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 15 264 IPR003010 GO:0006807
Vimu10g03108 296 Gene3D - 13 290 IPR036526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03108 Vimu-Chr10 41852854 41857711 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03108 K13566 - gmx:100817195 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03108 10 41852854 41857711 Vimu10g03108 10 41852854 41857711 ECH