Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03096 ATGCTAGCATATTTGGAGCACTTCGTTCACGAAAAAGATGCGGAATCCAGGCAAGACGACGAAGTTGCCAGCCTCTCCAGAGCGCTTGAACTTCAAGCCAGTATCGACGAATTGGGTCCCACCGGAATCGCCAGTAAGGATTTCGGCGGCATCAAGTCCGTGAAACCCTTGGCCATGATCAGGCCTTCCTCTGCCGTCGACGTGGCCAGAGTGGTGAAAGCCGCCGCGGCGTCACCGAGTCTGACGGTGGCGGCGCGGGGAAACGGGCACTCGGTGAACGGGCAGGCCATGGCGGAGAAGGGACTGGTCCTCGACATGCGTGCCTTGGAGGAGCCTTTTGAGATTGTCTGGATAGAAGGCACGGCCTACTTGGACGTCTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGCTGCGTTTCGGAAGTTGGACTCGCTCCGAGGTCGTGGACGGACTATCTCGGTTTAACAGTGGGTGGAACGCTGTCCTACGCGGGCGTCAGCGGGCAAACCTTCCGTTACGGTCCTCAGACATCCAACGTAACGGAATTGGAAGTTGTAACTGGCAAAGGCGAAACGCTGTGCTGCTCCCTGACACAAAACTCCGAACTTTTCTTTGGTGCGCTCGGTGGCTTAGGACAGTTGGGTATTATTACAAGGGCTAGGGTCGTTCTTCAAAAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTTTACTCTGAATTTGAGGAGTATGCTGGGGACGCAGAGTTGCTGGTGGAGGAAGTAGAGGAATGTTTTGATTACGTGGAAGGGTTCGTTCTGGTGAACAGTGATGACCCGGGCAATGGATGGCCCACGGTGCGATTGGACCCGGAACAAGTGTTTGACCCGATTCATATTCCTTCCACTGCTGGTCCAGTTTTATATTGCTTGGAGCTGGGTCTTCATTATGGTAACGCGGATGATCCTTCCGGTGGCCGTGTGGATATGGCAAATCTCGCTGACGTTAGGGTCCCCACACTTCCACAAATAGCCAAAAACCCATCATTTTCTGGAATCTCAAAATGTCAATTACTATATCATCCCTTAAATACAGATGTGGATCGATTGCTCCGACGGCTGCGATTCATTCCGGGTCTCAAGTTCCAGACGGATGTGAGCTACACGGAGTTTTTGCTACGTGTAAAGCGCGTGGAGGAGCACGCAAAAGCCAGCGGCACCTGGGATGCGCCTCATCCTTGGCTGAATTTGTTTGTGTCCAAATCCGACATTGTTGATTTCGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGGGTGGATGGCCCCATTTTAGTCTACCCCCTCTTGCGAACCAAGTACGTAACCATCAACTGTACCATATCTTGGTCGTCAATCGAAAATCATAAGCTCTTCATTGTGATGGTTGTACCGTCTTACTCCCTGCTCCTCCGTACCCTATCACACCCCCACCTCTTACCGCCACGATGCATACGCCCCACCCTTGGGGTGTTGTTGCAGTCGGTGGTGGTGCCTGACAGTGACATCTTCTACATAGTAGCCTTGCTCCGATTCAGCCCACCACCTCCAAAGGGTCCACCACCTGAACTCTTGGTGGCGCAAAACAATGAGATTATTCAGTTCTGCACAACCAGAGGCCTTGATTTCAAGCTATACTTTCCTCACTACCACTCTCGGGAGGATTGGATGAAACACTTCGGGAAACAATGGACCAGATTTGTGGAACGAAAGGCCAATTTTGATCCCATGGCTATCCTTGCGCCAGGACAGAGAATTTTCTCCAGAACCTCTCAACCTCGTCCTATCATTTAA 1815 0.519 MLAYLEHFVHEKDAESRQDDEVASLSRALELQASIDELGPTGIASKDFGGIKSVKPLAMIRPSSAVDVARVVKAAAASPSLTVAARGNGHSVNGQAMAEKGLVLDMRALEEPFEIVWIEGTAYLDVSGGALWEDVLKRCVSEVGLAPRSWTDYLGLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGETLCCSLTQNSELFFGALGGLGQLGIITRARVVLQKAPDMVRWIRVVYSEFEEYAGDAELLVEEVEECFDYVEGFVLVNSDDPGNGWPTVRLDPEQVFDPIHIPSTAGPVLYCLELGLHYGNADDPSGGRVDMANLADVRVPTLPQIAKNPSFSGISKCQLLYHPLNTDVDRLLRRLRFIPGLKFQTDVSYTEFLLRVKRVEEHAKASGTWDAPHPWLNLFVSKSDIVDFDREVFKKILKDGVDGPILVYPLLRTKYVTINCTISWSSIENHKLFIVMVVPSYSLLLRTLSHPHLLPPRCIRPTLGVLLQSVVVPDSDIFYIVALLRFSPPPPKGPPPELLVAQNNEIIQFCTTRGLDFKLYFPHYHSREDWMKHFGKQWTRFVERKANFDPMAILAPGQRIFSRTSQPRPII 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03096 604 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 226 IPR036318 GO:0050660
Vimu10g03096 604 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 357 450 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu10g03096 604 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 501 594 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu10g03096 604 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 229 315 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu10g03096 604 Gene3D - 106 230 IPR016169 -
Vimu10g03096 604 Gene3D - 42 105 IPR016167 -
Vimu10g03096 604 Gene3D - 554 594 IPR016167 -
Vimu10g03096 604 ProSiteProfiles PCMH-type FAD-binding domain profile. 52 228 IPR016166 GO:0071949
Vimu10g03096 604 SUPERFAMILY FAD-linked oxidases, C-terminal domain 229 447 IPR016164 GO:0003824|GO:0050660
Vimu10g03096 604 Gene3D - 231 450 IPR016170 -
Vimu10g03096 604 Gene3D - 502 553 IPR016170 -
Vimu10g03096 604 PANTHER GULONOLACTONE OXIDASE 29 595 - -
Vimu10g03096 604 Pfam FAD binding domain 56 196 IPR006094 GO:0050660
Vimu10g03096 604 SUPERFAMILY FAD-linked oxidases, C-terminal domain 492 594 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03096 Vimu-Chr10 41783491 41787061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03096 K00279 - gmx:100795849 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03096 10 41783491 41787061 Vimu10g03096 10 41783491 41787061 ECH