Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03095 ATGCTTGTGGGACAACAATTTTATCGCATTATCGAGAAATGTGGTGTATTGATGTTAATTATTATTATTATTTTTTTTTGCAGTGGCGCTCATTCTGCGATTGCGGGTTCTTCGAATGTTGGGAAATCCAGTGCATCTGCCGAACATGGGGATTATAATGATATTCAGGGATCGTCTGTTCGATCCAGTGATGATGCTTTGCGGTTGATGTCTTCTGATGAGGGGAGTAACTTTGATGAAGGAAATGACAGTGACATCGCAAATGTAGATGATCAAGTAGCCAAGATGGATCTTACGGATGATTTGTTGCACATGGTTTTCTCCTTTTTGGATCACTCCAATCTCTGCAAAGCTGCCAGGGTTTGTAATCAGTGGAGAACTGCTAGTGCTCACGAAGACTTCTGGAAGAGTTTGAATTTTGAAGATCGTAACATATCTGTTGAGCAATTCGAGGACATCTGTAGGCGTTATCCTAAAATCGCAACAATCCGCTTGTCCGGTCCTTCCTCTTACCAGCTTGTCATGAAGGCCGTCTCTTCGTTAAGGTTGGTAGCTTCTTCGGCTTTAACGTTGGGAAGAGGAAATATAATGGATAGTTTTTTCCATGCTTTGGCTGATTGTTCTATGTTGAGGAGACTGAGCATCAATGATGCTGTACTTGGTAGTGGTATTCAGGAAATATCAGTTAATCACGACAGACTGTGTCATCTTCAGTTGACTAAGTGCCGAGTGATGCGAATAGCTGTCAGGTGCCCACAACTCGAAACCATGTCCTTGAAGCGAACTAACATGGCTCAGACTGTACTCAACTGCCCCCTTTTGCAAGAGCTTGATATAGGGTCTTGCCACAAACTTCCTGATTCTGCTATTCGATCAGCTGTGACATCATGCCCGCAATTAGTTTCTTTGGACATGTCTAATTGTTCATGTGTTAGTGATGAAACATTAAGGGAGATAGCCCAGAATTGTGCCCACCTCAGTTTTCTTGATGCATCATACTGTCCAAATGTATCCCTAGAGACTGTTCGACTGCCAATGTTAACAACTCTGAAGCTACACAGTTGTGAGGGCATCACTTCAGCTTCAATGGCTGCAATAGCTTATAGTTCCATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCTCGCTTGCAGAACATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAATTTGATGACCCTGACGCTGTCTTCTATTTTGGTGTCCAATTGTCCCGTGCTCCATCGTATAAACATCACATCAAATTCACTTCAAAAATTAACTATACCAAAGCAGGACAGCTTAACCACATTGGCTTTGCAATGCCAATCTTTGCAAGAAGTGGATCTCTCTGAATGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGAGGCTGTCCAGTGTTGAAATCATTAATTCTCGATAATTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTAATCTGTCTTTCACTTGGTGGTTGCCGGGCAATAACTAATCTTGATCTCACATGCCCTAATCTAGAGAAACTTGTATTGGATGGCTGTGATCATTTGGAAAGAGCGTCATTTTGTCCTGTTGGTCTTTCATCTCTCAATTTAGGAATATGTCCAAAATTGAGTACACTCAGCATTGAAGCACCTTATATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATTCATTAATTGTCCACTCTTAACATCTCTCGATGCTTCCTTTTGCAGCCAACTAACTGATGACTGCTTGTCTGCTACAACTGTCTCATGCCCACTGATTGAGTCATTGATATTGATGTCATGCCCATCAATTGGTTCAGATGGTCTTCGATCTTTATTTTGTCTTCCAAATTTGACCGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAACCTGTTTTTGATTCTTGTTTACAGCTAAAGGTGTTAAAGCTGCAAGCATGCAAATATCTCACTGAAACATCACTTGAACCACTTTACAAAGGAGGGGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGGAACTTTCTCTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAGCCTCACTCATGTGAGCTTGAATGGCTGTTTGAATATGCATGATTTGAATTGGGGATGCAGTTGTGGGCAGAGTAAAAATTTGCCTGCTGCAAACACCCTATCCAGGGCAAGTTCTAATGAGAATATTCCTGAATCAAGTGAGCAATCCCCTCGCTTGTTGCAAAACCTTAATTGTGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGGGCAAATTGTTGTCATTTGTTAATTTTAAACCTTTCGCTCTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAACCTATGCTTTCTTAATTTAAGGTATGGTTGGGTCTGCGATAAATGTGTGTTGGTTTCTATCCGTCTCATATCAGATATATGCAATTGTTCCTCTCTGGAAATTTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCGAAATGCAATATACTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCGAGTTTGAAGCGTATATTCAGCAGTTGGTCAACTTTGTTACCTTGA 2757 0.4081 MLVGQQFYRIIEKCGVLMLIIIIIFFCSGAHSAIAGSSNVGKSSASAEHGDYNDIQGSSVRSSDDALRLMSSDEGSNFDEGNDSDIANVDDQVAKMDLTDDLLHMVFSFLDHSNLCKAARVCNQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPKIATIRLSGPSSYQLVMKAVSSLRLVASSALTLGRGNIMDSFFHALADCSMLRRLSINDAVLGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRTNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREIAQNCAHLSFLDASYCPNVSLETVRLPMLTTLKLHSCEGITSASMAAIAYSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLTLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLILDNCESLTSVQFISTSLICLSLGGCRAITNLDLTCPNLEKLVLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDDCLSATTVSCPLIESLILMSCPSIGSDGLRSLFCLPNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQACKYLTETSLEPLYKGGALPALQELDLSYGTFSQSAIDELLACCTSLTHVSLNGCLNMHDLNWGCSCGQSKNLPAANTLSRASSNENIPESSEQSPRLLQNLNCVGCPNIRKVVIPLRANCCHLLILNLSLSANLKEVDVTCLNLCFLNLRYGWVCDKCVLVSIRLISDICNCSSLEILKLECPRLTSLFLQSCNVDEEAVEAAISKCNILETLDVRFCPKISSMSMGRLRTICSSLKRIFSSWSTLLP 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03095 918 SUPERFAMILY RNI-like 379 679 - -
Vimu10g03095 918 FunFam F-box/LRR-repeat protein 15 343 503 - -
Vimu10g03095 918 SUPERFAMILY F-box domain 97 160 IPR036047 GO:0005515
Vimu10g03095 918 FunFam F-box/LRR-repeat protein 15 653 738 - -
Vimu10g03095 918 FunFam F-box/LRR-repeat protein 15 90 341 - -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 90 341 IPR032675 -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 422 559 IPR032675 -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 823 917 IPR032675 -
Vimu10g03095 918 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Vimu10g03095 918 FunFam F-box/LRR-repeat protein 15 504 651 - -
Vimu10g03095 918 SUPERFAMILY L domain-like 572 910 - -
Vimu10g03095 918 PANTHER OS10G0396666 PROTEIN 79 915 - -
Vimu10g03095 918 SMART LRR_CC_2 688 712 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 660 685 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 481 511 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 453 477 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 877 908 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 523 548 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 390 415 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 344 369 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 852 876 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 271 296 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 612 637 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 586 611 IPR006553 -
Vimu10g03095 918 SMART LRR_CC_2 297 322 IPR006553 -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 342 421 IPR032675 -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 560 653 IPR032675 -
Vimu10g03095 918 Gene3D Ribonuclease Inhibitor 654 746 IPR032675 -
Vimu10g03095 918 Pfam F-box-like 100 140 IPR001810 GO:0005515
Vimu10g03095 918 SUPERFAMILY RNI-like 189 406 - -
Vimu10g03095 918 CDD F-box_FBXO41 100 139 - -
Vimu10g03095 918 SMART fbox_2 98 138 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03095 Vimu-Chr10 41766190 41771527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03095 - - vum:124826181 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03095 10 41766190 41771527 Vimu10g03095 10 41766190 41771527 ECH