Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03083 ATGGGTAACAGACAAGTATATTTGGCCATGATTATAGCATGGCTTACTTTGTTTGAAGGAAACGTGATGCTTGTCAATGGTGATTTCAATTACAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTTGAGGCACAACGATCAGGGAAACTTCCCTCAAGTAATAGGGTGCCCTGGAGAGGAGACTCAGCACTCGATGATGGAAAACTCGCCAACGTGGACCTTGTCGGAGGATACTATGATGCAGGGGACAATGTCAAATATGGTCTCCCCATGGCTTTCACCGTCACTACGCTGGCATGGGCTGCTATTTTTTACAAGGAAGAATTTAAAGAAGCAAAAGAGATGGATCATCTTATCGATGCCATTCGCTGGGGCACTGATTATTTTCTCAAAGCTAGTTCTCGACGCAAAAGATTATACGTAGAGGTAGGAGACGCGGAAGAGGATCACAAGTGTTGGATTCCACCAGAATATATGAAGACACCGAGAACGGTTAAGAAGATTGGTGACGGCATGGCCGGGAGTGAAATCGCAGCTGAAACTGCAGCTGCAATGGCAGCTTCTTCCATCGTTTTCAGACCCAAAAATCGTAAATATTCTCGTTCTCTTCTCAACAGAGCTAAAACGGTACGTGAAGTATTTCAGCTTTTCCTTATGGCCAAATCGCATAAAGGAACGTATGATGGAGAATGTCCCTTCTACTGCTCTTATTCCGGCTATAATGACGAATTGATGTGGGCAGCAACATGGCTATACATTGCTACGAAGAGGTCAATGTATTTAAAGTACATATTAGAAGATTCCAAGAGTGCTAGTGTATCAGAATTTAGTTGGGACCTTAAATATGCCGGAGCTCAAGTCCTTCTTAGCCAGTTATATTTCGACGGTGAAAAGAAGTTCGTGAAATTCAAATACCATGCAGAAAGTTTCATATGCTCTGTCCTTCCAGACAGTCCCTACCACCAGATTACAATGTCTCCTGGTGGCTATATTCATTTAAGAGACGGAGCCAACTCGCAGTATGCAACTAGCACCGCTTTCTTGTTCAGTGTATACAGTGACTTGCTTGCCAAACATAAAGGCAAAGTTACTTGTGGTGACAAAACGTTTAGCTCTTCCCGTCTCTTTTCTTTCGCTAAGCAACAAATGGATTACATTCTAGGGAAAAACCCACTAGGAAGATCGTACATGGTAGGATTTGGAAAGAACCCACCAATGCAACCTCACCATAGAGGTGCTTCGGTGCCGACACTGAAAAAGGGTGAGGAAAATGTGCCTTGTGGCATGACCTTCACAAAATGGTTTATGAAAGATGAACCTAACCCTCATGAACTCACCGGTGCCATTGTGGGTGGAGCTGATCGCCAAGACAACTTCAAAGATAAACGTTGGGAGTCACCATACACTGAACCATGCACCTACGTCAATTCCCTCGCTGCTGGAGTTCTTGCAAAGCTTGCATCTTTGTCTTGA 1473 0.4413 MGNRQVYLAMIIAWLTLFEGNVMLVNGDFNYKEALTKSLIFLEAQRSGKLPSSNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWAAIFYKEEFKEAKEMDHLIDAIRWGTDYFLKASSRRKRLYVEVGDAEEDHKCWIPPEYMKTPRTVKKIGDGMAGSEIAAETAAAMAASSIVFRPKNRKYSRSLLNRAKTVREVFQLFLMAKSHKGTYDGECPFYCSYSGYNDELMWAATWLYIATKRSMYLKYILEDSKSASVSEFSWDLKYAGAQVLLSQLYFDGEKKFVKFKYHAESFICSVLPDSPYHQITMSPGGYIHLRDGANSQYATSTAFLFSVYSDLLAKHKGKVTCGDKTFSSSRLFSFAKQQMDYILGKNPLGRSYMVGFGKNPPMQPHHRGASVPTLKKGEENVPCGMTFTKWFMKDEPNPHELTGAIVGGADRQDNFKDKRWESPYTEPCTYVNSLAAGVLAKLASLS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03083 490 Gene3D - 25 490 IPR012341 GO:0005975
Vimu10g03083 490 Pfam Glycosyl hydrolase family 9 31 483 IPR001701 GO:0004553|GO:0005975
Vimu10g03083 490 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 385 411 IPR018221 -
Vimu10g03083 490 PANTHER ENDO-1,4-BETA-GLUCANASE 23 488 - -
Vimu10g03083 490 FunFam Endoglucanase 27 490 - -
Vimu10g03083 490 SUPERFAMILY Six-hairpin glycosidases 27 488 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03083 Vimu-Chr10 41681013 41683151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03083 21 488 Glycoside Hydrolase AT3G43860 66.454 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03083 K01179 - gmx:100811509 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03083 10 41681013 41683151 Vimu10g03083 10 41681013 41683151 ECH