Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03082 ATGGGCCTAGTCTGCAGCAAAAGACGACGTTTTCGTGATGCTGATGCTGAAGAAAATGCTCAGGATGCCGAAATTGAAAGAAGAATCGAGTTAGAAACAAAGGCTGAAAAACATATTCAGAAACTTCTACTATTAGGTGTGCTGGAGAGTCTGGGAAGTCTACAATCTTTAAGCAGGCAAGAGATTTCATCTTCAGAGCTGCTTATGATAAAACTTTTGTTTCAAACTGGCTTCGACGATGCTGAGCTAAAAAGCTACATACCAGTCATCCATGCTAACGTGTTTCAGACAATAAAAGTACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATGATGCTGATTCTTCAAAGTACGTAATATCTAATGAAAACCAGGACATTGGGGAAAGGCTCTCAGAAATAGGAGGCAGGCTGGATTACCCGCGTCTTACCAAGGAGCTTGCACAGGAAATTGAGACTCTGTGGGAAGATGCTGCAATTCAGGAAACATATGCCCGTGCTAATGAACTCCAAGTTCCAGATTGCACCCATTATTTCATGGAAAATTTGGAGAGACTGTCTGATGCAAATTATGTTCCGACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACCGGTGTTGTCGAGATCCAATTCAGTCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGCCAGAGAAATGAGAGGAGAAAGTGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAGACTAAGGAACTTTTTGAGTGGGTCCTGAAGCAACCATGTTTTGAGGTTCCGCTCAATGTGTGTGAGTGGTTCAAAGAATACCAGCCAGTTTCAACAGGGAAGCAAGAGATAGAACATGCGTACGAGTTTGTGAAGAAAAAGTTTGAGGAATTGTATTTCCAGAGCATTGCTCCTGACCACGTAGATCGTGTGTTCAAGATATACCGGACCACTGCTCTTGATCAGAAGCTTGTGAAGAAGACTTTCAAGCTTGTTGACGAGACTTTGAGACGGAGGAATCTGTTTGAAGCTGGCTTATTATGA 1128 0.4202 MGLVCSKRRRFRDADAEENAQDAEIERRIELETKAEKHIQKLLLLGVLESLGSLQSLSRQEISSSELLMIKLLFQTGFDDAELKSYIPVIHANVFQTIKVLHDGSKELAQNDADSSKYVISNENQDIGERLSEIGGRLDYPRLTKELAQEIETLWEDAAIQETYARANELQVPDCTHYFMENLERLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLYEDENKNRMMETKELFEWVLKQPCFEVPLNVCEWFKEYQPVSTGKQEIEHAYEFVKKKFEELYFQSIAPDHVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03082 375 FunFam Guanine nucleotide-binding protein subunit alpha 197 375 - -
Vimu10g03082 375 FunFam Guanine nucleotide-binding protein alpha-1 subunit 79 204 - -
Vimu10g03082 375 PRINTS Plant G protein alpha subunit signature 27 36 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vimu10g03082 375 PRINTS Plant G protein alpha subunit signature 211 226 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vimu10g03082 375 PRINTS Plant G protein alpha subunit signature 310 325 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vimu10g03082 375 PRINTS Plant G protein alpha subunit signature 327 339 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vimu10g03082 375 CDD G-alpha 70 369 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 372 IPR027417 -
Vimu10g03082 375 Gene3D - 79 204 IPR011025 GO:0007165
Vimu10g03082 375 Pfam G-protein alpha subunit 22 363 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 10 371 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 SUPERFAMILY Transducin (alpha subunit), insertion domain 78 203 IPR011025 GO:0007165
Vimu10g03082 375 ProSiteProfiles G-alpha domain profile. 38 375 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 PRINTS Alpha G protein (transducin) signature 248 276 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 PRINTS Alpha G protein (transducin) signature 191 213 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 PRINTS Alpha G protein (transducin) signature 226 243 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 SMART galpha_1 19 374 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu10g03082 375 Gene3D - 70 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03082 Vimu-Chr10 41676481 41679934 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03082 K19729 - gmx:547804 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03082 10 41676481 41679934 Vimu10g03082 10 41676481 41679934 ECH