Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03066 ATGGGCTTGGCCCAGGAACAAAATACATTTCATATCACTCACTTCCCGCTTAAAAATTTGAAATGCGTATCGTATTTGCTTCAAGTTCTGGCGCAGAGTAGAGAAGAGATTATTTCCACAATGAATTGGGACGAGAACGATGAATTTGAGATCCCTCTTACTCAAACGGCAATGGCTTTTCACGAGCTCGCTTCCGTCGACAATAATCAACGGCCATTGAAGAAACCAAAACGTAAAACGACGGCGCTTCGTGGCAGTGGCAAGGAGAACGCCCGACCCAGCGAGGGCTGCGAAATTCTGAACTGCAGCTTGGATTTCATTCCTTCCTCCCTAGATTGCATTTCGGTTTGCAGCGTTCAACAATCTGAACAAGACGACAGTGATTCTTCTTCCGCGTCTTTATCGGAGCTGAAACAGAAGGGGAATTATCTTCACAACTCGATAGAGTCGAAGCTGTTGGTTTCGAGAACCGGCGAGCTTAACGCTGCAGATGCAGATTCTGATTCGGAGCTTGGTCTGTTGATGAATTTGTGCGACGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTTTGTGATGTTGATATTTCGAATTTGACTGAGGAACAGAGACATCTTCATACCAATAATTGTCTTGACAAAGGCGATAACGTTGCGGTTCCTGAAGACGATAAGGGTGTTCCACATGTGCCAAAAGTCGCTTCTGTTGTTGATTGGCTTCACGGGCTCGGTTTGGGAAAGTATGAAGTGATTTTCGTTAGGGAAGAAGTTGATTGGAACACCTTGCAATGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCATTTGGGCCAAGAAAAAAGATTGTGCATGCCCTGTGTGAACTAAGAAAAGGAGATGCCACTGCAAATGAGAAACAAAGGGTTTCGTTGGCGGAGCCTGTAAGGATTAGAAACCAGAAAGTCAAATTAAAGCGTGACAAATCTGAAAGAAAAACTGACGGTTCTATTAAACCAGCAGCAAACAAATTAATTACGGAATATTTTTCGGGGTTTGCTTCCAAAGAAAAGAAAGTTTCTGCTTGTCCTGGAGAACAAAAGGAAATGAAAAACAGTGACTTGGATTCTGGTCGTAAGCACAAATCAAAAAATGTGACAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTTCTGTACAAGGAACGCCTTTCCGAGTGGTCCGATTGTCTGACAAATACATCATTACATGCAGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCATTTGGACCTGGGAGATCGAAGATGTTCATCATGGAAAACAATGTGTGGATCCTTTCCATCAGATTCAAAATTTTCCAAGTGACGCCTTGGCTGTTGATTATCAAGGTCTTACCAAGTCATTCAATCATGGAAAGATTTATTGCTCCTCCATTACGGCTAGATTAGTAAATACGAACATTGGAATTTCATATGATAAATTACACGTTTTGCCTCTAAACCAAAAGATTGAAATAGCTGGTGTTGATGTGACTTGCTTTGATGCCAACCACTGTCCAGGTTCCATACTCATACTCTTTCAACCTCCTAATGGTAAGGCTGTGCTGCACACGGGTGATTTCCGGTTTAGTGACGAAATGACAATCAATCCTTTACTCAAGATGTGTCCTATCAATACTCTAATTCTTGATACAACATACTGCAATCCACAGTATGACTTTCCGAAACAAGAGGCTGTAATACAATTCGTCATTGATGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTCCTGATCGGCAGCTATACCATTGGTAGTAAAAAGGTTCACGTGACTGCGGCAAAATTGCGTCTTTTAAAATGTTTGGAATTTAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCAAATATCAAGTCAATATAAGGACCGGTACAATCTTATAGTCGCTTTCTCCCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCCGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAGGTACCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAAACTTGTATCTCCTAGCAACATTATACCAAGTGTGAATAACGATGGACCAGAATCTTCTGATGCAATGATTTCTCTATTGTTATCTTGA 2259 0.4201 MGLAQEQNTFHITHFPLKNLKCVSYLLQVLAQSREEIISTMNWDENDEFEIPLTQTAMAFHELASVDNNQRPLKKPKRKTTALRGSGKENARPSEGCEILNCSLDFIPSSLDCISVCSVQQSEQDDSDSSSASLSELKQKGNYLHNSIESKLLVSRTGELNAADADSDSELGLLMNLCDELEEVDSSVRCPLCDVDISNLTEEQRHLHTNNCLDKGDNVAVPEDDKGVPHVPKVASVVDWLHGLGLGKYEVIFVREEVDWNTLQWLTEEDLLSMGITAFGPRKKIVHALCELRKGDATANEKQRVSLAEPVRIRNQKVKLKRDKSERKTDGSIKPAANKLITEYFSGFASKEKKVSACPGEQKEMKNSDLDSGRKHKSKNVTTNRKLRDVPKWCSVQGTPFRVVRLSDKYIITCRMLSNISEEIVPTGFSHTSIWTWEIEDVHHGKQCVDPFHQIQNFPSDALAVDYQGLTKSFNHGKIYCSSITARLVNTNIGISYDKLHVLPLNQKIEIAGVDVTCFDANHCPGSILILFQPPNGKAVLHTGDFRFSDEMTINPLLKMCPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGSKKVHVTAAKLRLLKCLEFKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKQISSQYKDRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKLVSPSNIIPSVNNDGPESSDAMISLLLS 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03066 752 SMART SAM_4 229 295 IPR001660 GO:0005515
Vimu10g03066 752 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 385 746 - -
Vimu10g03066 752 Gene3D - 229 298 IPR013761 -
Vimu10g03066 752 Pfam SAM domain (Sterile alpha motif) 233 291 IPR001660 GO:0005515
Vimu10g03066 752 CDD SNM1A-1C-like_MBL-fold 467 575 - -
Vimu10g03066 752 SUPERFAMILY SAM/Pointed domain 233 294 IPR013761 -
Vimu10g03066 752 MobiDBLite consensus disorder prediction 356 382 - -
Vimu10g03066 752 MobiDBLite consensus disorder prediction 70 93 - -
Vimu10g03066 752 Pfam DNA repair metallo-beta-lactamase 634 738 IPR011084 -
Vimu10g03066 752 Gene3D - 578 713 - -
Vimu10g03066 752 ProSiteProfiles SAM domain profile. 232 295 IPR001660 GO:0005515
Vimu10g03066 752 SUPERFAMILY Metallo-hydrolase/oxidoreductase 470 734 IPR036866 -
Vimu10g03066 752 CDD SAM_superfamily 236 289 - -
Vimu10g03066 752 Gene3D - 466 735 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03066 Vimu-Chr10 41572801 41579504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03066 235 289 Glycosyltransferase AT3G07170 47.273 5.48e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03066 K15340 - gmx:100816321 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03066 10 41572801 41579504 Vimu10g03066 10 41572801 41579504 ECH