Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03064 ATGGCGAGTGAACGTGATCTGTTCTCGGCGGAGATTGTGAACCGTGGGATTGAGTCTTCTGGGCCAAACGCTGGGTCCTTGACCTTCTCCGTCAGGGTTAGGAGGCGTTTGCCGGATTTTCTTCAGTCCGTTAACCTCAAGTACGTTAAATTGGGTTACCATTATCTGATAAACCATGGCATATACTTGTTGACCATACCCGTTCTTCTGGTGGTCTTCAGTGCTGAGGTTGGAAGCCTCAGCAAAGAAGACCTTTGGAAGAAGCTTTGGGAAGATGCGCGTTACGACCTTGCCACTGTTCTTGCTTCCTTTGGGGTCTTCGTCTTCACTTTGTCTGTTTACTTCATGTCACGCCCTCGACCCATTTACCTCATTGATTTTGCATGCTTTAAACCAGATGATGAACTCAAGGTGTCAAGGGAGGAGTTGATGGAAGTGGCAAGAAAATCAGGGAAGTTCGACGAAGAGAGTCTTCACTTCCAAAAGAGGATGTTAATGTCCTCCGGCATCGGAGATGAAACCTACATCCCCAAAGCCGTCATGGCCTCCTCCGAGAACACCGCCACCATGAAGGAGGGTCGTGCAGAGGCCTCCATGGTCATGTTCGGAGCCCTGGACGAGCTCTTCGAGAAAACCCGTGTCCGCCCCAAGGACGTGGGCGTTCTGGTTGTCAACTGCAGCATCTTCAACCCCACTCCGTCGCTGTCAGCCATGATCATCAACCACTACAAGATGCGGGGGAACATCCTCAGCTACAACCTCGGAGGAATGGGATGCAGTGCTGGGGTCATAGCCGTGGACTTGGCTAAGGATATTCTGCAAGCAAACCCTAATAACTACGCGGTGGTGGTCAGCACTGAGATGGTGGGCTACAACTGGTACCAGGGCAAGGACAGGTCCATGCTCATTCCTAACTGTTTCTTCCGCATGGGTTGCTCCGCCGTCTTGCTCTCCAACCGCCGCCGGGACTACAGCCGAGCCAAGTACCGTCTTGAGCATATTGTTCGAACTCATAAGGGTGCTGATGATCGTAGCTTCAGGTGTGTGTACCAAGAAGAAGATGAGCAGAAACTGAAGGGACTAAAGATCAGCAAAGACTTGATTGAGATTGGTGGCGATGCTCTAAAGACCAACATCACCACACTAGGACCCTTGGTGCTACCCTTTTCTGAGCAGCTTCTGTTCTTTGGGACCCTTGTGTGGAGGCACCTATTTGGGAGCAAAACTGATGGGAGTTCTCCATCAATGAAGAAGCCATACATTCCTGACTACAAACTGGCTTTTGAGCACTTCTGTGTGCATGCTGCAAGCAAGACCATTCTTGATGAGCTTCAGAGGAACTTGGAGCTGAGCGACAAGAACATGGAGGCATCAAGGATGACACTGCAGCGCTTTGGCAACACCTCTAGCAGCAGCATTTGGTATGAGCTGGCTTACATGGAAGCAAAGGAGAGTGTGAGAAGAGGAGACCGTGTTTGGCAACTTGCTTTTGGGTCTGGCTTCAAGTGCAACAGTGTTGTGTGGCGTGCCATGCGTAGAGTCACTAAGCCTTCAAGGAACCCTTGGCTTGACTGCATCAACAGATATCCTGCAACTCTCAACTGA 1605 0.5065 MASERDLFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLLTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFGVFVFTLSVYFMSRPRPIYLIDFACFKPDDELKVSREELMEVARKSGKFDEESLHFQKRMLMSSGIGDETYIPKAVMASSENTATMKEGRAEASMVMFGALDELFEKTRVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGVIAVDLAKDILQANPNNYAVVVSTEMVGYNWYQGKDRSMLIPNCFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDEQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFGTLVWRHLFGSKTDGSSPSMKKPYIPDYKLAFEHFCVHAASKTILDELQRNLELSDKNMEASRMTLQRFGNTSSSSIWYELAYMEAKESVRRGDRVWQLAFGSGFKCNSVVWRAMRRVTKPSRNPWLDCINRYPATLN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03064 534 Coils Coil 441 461 - -
Vimu10g03064 534 CDD CHS_like 98 508 - -
Vimu10g03064 534 FunFam 3-ketoacyl-CoA synthase 132 510 - -
Vimu10g03064 534 PANTHER 3-KETOACYL-COA SYNTHASE 100 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g03064 534 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 429 509 IPR013747 -
Vimu10g03064 534 Pfam FAE1/Type III polyketide synthase-like protein 114 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu10g03064 534 SUPERFAMILY Thiolase-like 332 510 IPR016039 GO:0016746
Vimu10g03064 534 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 534 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g03064 534 Gene3D - 123 510 IPR016039 GO:0016746
Vimu10g03064 534 SUPERFAMILY Thiolase-like 108 326 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03064 Vimu-Chr10 41537387 41542159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03064 2 533 Miscellaneous Gene Families AT2G26250 76.951 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03064 K15397 - gmx:100778487 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03064 10 41537387 41542159 Vimu10g03064 10 41537387 41542159 ECH