Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03062 GTAAGCTTGAAGAGAAAGTCCCCGGAAGATGAAAATCGTGTACTCTTCAACACCTTTTCTCTGGATGACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTAAGTTCTGTGTGCAAAAGATGGAAATCGGTTGCTGATTCTGCCAGTTTCAAGCTTGCCTGCTCTCACGTTCCCTCGATGGATCCTTGGTTTTTAATGGTTGCTCCCAACCTTAATCAATCTGTTATCTTTGATTCTGCTGAGAGCGCTTGGAAGAGACTAAACCACCCACCTCTTCTGCAAGAGGAATCTAACCAAAACTGCATGCCGGTTGCAGCCTCTGGTGGCTTGATTTGCCACCGGAAATTATCAGGAAATTTCATTGTGAGCAACCCCGTGACAGGATCTTGTACAGAACTTCCCCCACTTCATACCCCGCAGCATCAACCTCTCAATGCCATTGTGATGAGCACAGCTTGCAACGACCAACTCTCCTTCAAAATTGTCTTAGTCTTCGGTGAACTTCCAAATCTCTTGTTCAAAGTCTACGATTCAAGATCTGGCTGTTGGGATGATGAGATTGCTTTGAGGAGAAAGACAGAAGACGGTTCAATGGAACATGATTCTACTGATGACAATGTTGTGTACTTCCTCAGCAAGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCTAAGCAATATTCATCAGTTATTACCAACAAAGATGGCCAAGACATTGTGTATTTTCTTAGCTCCTCAGGGAAAGTGGTAGCATGCAATTTGACGTGCAAGTGCTTCTCTGAGTACCCCAGGTTGTTACCTGTTTTTAGTGAGTATTCCATTGATGTTGTAGAGTGCAATGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGAGACTGCAACTCTTAGAGTATGGAAATATGATGAGGCTAACAGAGGGTGGCATCAGATCGCG 978 0.4407 VSLKRKSPEDENRVLFNTFSLDDLNEDLFERILSWLPTSTFFRLSSVCKRWKSVADSASFKLACSHVPSMDPWFLMVAPNLNQSVIFDSAESAWKRLNHPPLLQEESNQNCMPVAASGGLICHRKLSGNFIVSNPVTGSCTELPPLHTPQHQPLNAIVMSTACNDQLSFKIVLVFGELPNLLFKVYDSRSGCWDDEIALRRKTEDGSMEHDSTDDNVVYFLSKAGIVVASNMQRSPSKQYSSVITNKDGQDIVYFLSSSGKVVACNLTCKCFSEYPRLLPVFSEYSIDVVECNGEMLVVLLSEFLETATLRVWKYDEANRGWHQIA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03062 326 SUPERFAMILY Galactose oxidase, central domain 69 325 IPR011043 -
Vimu10g03062 326 Gene3D - 15 61 - -
Vimu10g03062 326 PANTHER BNACNNG10540D PROTEIN 20 194 - -
Vimu10g03062 326 Pfam F-box domain 21 60 IPR001810 GO:0005515
Vimu10g03062 326 CDD F-box_AtFBW1-like 22 60 - -
Vimu10g03062 326 ProSiteProfiles F-box domain profile. 18 63 IPR001810 GO:0005515
Vimu10g03062 326 SMART fbox_2 24 64 IPR001810 GO:0005515
Vimu10g03062 326 SUPERFAMILY F-box domain 18 76 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03062 Vimu-Chr10 41513347 41514326 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03062 - - gmx:100786481 574.318