Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03061 ATGCTTGTCTCGGGAGTGTCCTCATCATCATGGGATCTCAAATGGCTCCTGCAATTCGTCTTCTCCGCGTTCGTCTTGGCGATGGGCTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACAACACCAACACCAGCACCAGAACCAACGCCACGACGCCATGCCTGGTCTTCTCATGGACGATTCTGTCTGCGCCGTTTGTCGCAACCCCGGCAGCAAGCAGTGTTCGCGATGCAAATCCGTTCGTTACTGTGTTGCTGCGAATTTGAGTTCACAAGCATGCCAACAGGCGCACTGGAAATCGGAGCATAAGGTTCTTTTTCCTTATGATGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCATGTGGACTGTTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTTCAATGCCTTTCTTTCACAAGGCCACTTATTGCCTACCTACTGGAGAAGGGGCACCGCAGTGAATGCTGTCATAATGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTAAAGCGTTTTCTCCAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCACACGAGTTCATGAGGTTTTCCATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGGGAAAAAGCTGTTCCTCCGAAGCTTCAGGAAACGACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGAGAAGAATTCTAATCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCTTCTGTGGAGGAATGTCTGGACCAGTTTACTGCCAAAGAATGGCTTCATGGGGATAATATGTATAAATGTGACGGGTGCAAGGGCTATGTGAAGGCATGGAAACGTCTCACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAGTAGCTTTCCCAGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATACGCTGTCGTGGTGCATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTGGAGTGGAGTTGGAAGAGGTGCTTTCTCAGAGCGCTTATATGCTGTTGTATAGCAGGGTTCATGCTCGAGCTTCAGGACTTCAAAGTATAGTCTCTTCAGAGACAGCAGAAGTGCAGCCTAGCTCAACTGAACATGCTGAATACCTCCCGGAATCAAGAACTGAGTCTAACAGTGGAGGATGTGAGTCCTCTCCATCTAACAGTAGTCCAGAATTTATGGTTCCCTGCGAAGACATGCCTTTGACTGAAATAAACTCCGGAGTTAAAAGAGAACAGTCGAAGGATGTTGAAATTATTGAGGTAAACGGTAATGACCCTGTCTGTAACGGTGTTGAATCATCATATATGCACGGTTCTGAAGCTGACAAAGATATGATGGACATAGAAGATTCAGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGACAGTGATTTGGCTAAGTTGAGTCCTACTTCGTCTTTGCCTAATAAATACTCTTCTGTTTTAGTGGATTATGAAAACGCAAGGGAAGATTCAGATTCAAAGCAGCCGGTAGATACGATTAAAAGCATAGTAACAGCAAATGGCTTTGCAGATCATAGCAACGGTTATGTGAGTGCAAACAAATATGATGATGTCCCAGTGGAAGACTGTGATGATTCTTTTTTGACTGAAACAACAACCTCAGCAGCTGTAAAGCATGGGAAATTGGCCTCCGACAAACATGAAGATGACAAAGGAAACAGAGTTAAGGAAGTGGAAATATGA 2049 0.4339 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEQHQHQHQNQRHDAMPGLLMDDSVCAVCRNPGSKQCSRCKSVRYCVAANLSSQACQQAHWKSEHKVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKVRLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASVEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFSGNWYRIDDWKVVGVELEEVLSQSAYMLLYSRVHARASGLQSIVSSETAEVQPSSTEHAEYLPESRTESNSGGCESSPSNSSPEFMVPCEDMPLTEINSGVKREQSKDVEIIEVNGNDPVCNGVESSYMHGSEADKDMMDIEDSDGSNTCSSVLEEISVCMEEQDDSDLAKLSPTSSLPNKYSSVLVDYENAREDSDSKQPVDTIKSIVTANGFADHSNGYVSANKYDDVPVEDCDDSFLTETTTSAAVKHGKLASDKHEDDKGNRVKEVEI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03061 682 FunFam Ubiquitin carboxyl-terminal hydrolase 15 131 451 - -
Vimu10g03061 682 MobiDBLite consensus disorder prediction 454 494 - -
Vimu10g03061 682 Pfam MYND finger 75 116 IPR002893 -
Vimu10g03061 682 MobiDBLite consensus disorder prediction 659 682 - -
Vimu10g03061 682 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 137 443 IPR028889 -
Vimu10g03061 682 MobiDBLite consensus disorder prediction 662 682 - -
Vimu10g03061 682 Gene3D - 70 119 - -
Vimu10g03061 682 CDD Peptidase_C19E 136 441 - -
Vimu10g03061 682 SUPERFAMILY HIT/MYND zinc finger-like 72 116 - -
Vimu10g03061 682 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 52 444 - -
Vimu10g03061 682 Gene3D Cysteine proteinases 133 452 - -
Vimu10g03061 682 Pfam Ubiquitin carboxyl-terminal hydrolase 137 440 IPR001394 GO:0004843|GO:0016579
Vimu10g03061 682 MobiDBLite consensus disorder prediction 454 495 - -
Vimu10g03061 682 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 138 153 IPR018200 GO:0004843|GO:0006511
Vimu10g03061 682 SUPERFAMILY Cysteine proteinases 133 446 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03061 Vimu-Chr10 41504938 41510047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03061 12 491 Miscellaneous Gene Families AT4G31670 58.192 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03061 K11855 - gmx:100810577 976.081