Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03059 ATGAACAACTCTTTGGTAGTAGCTGCACAAGATGGGGACGTAGACTTGCTCTACAAGCTGATTCAGATGCAACCCTACGTGCTGGAACACACCGACTTCATGCCATTCGTTGACACTCCACTGCATGTTGCAGCTGCTGCAGGACATGCCAGTTTTGCCACTGAGGTCATGAGACTCAAACCCTCCTTTGCATGGAAGCTCAACCAGTGTGGCCTCAGCCCCATGCATATTGCGTTGCAGAACAATCATCACAGATTGGTGTGTCGCTTTGTGGAGATCAACAAGGACCTCGTCAGGATCAAAGGGAGAGAGGGTCTCACTCCTTTGCATGTTGCAACTCAAACTGGGAGAATCGATCTTGTGGCAAAGTTCTTATCGGCTTGTCCAGATTCCATCGAAGATGTAACTGTTCGAAGTGAAACCGCGCTGCATATTGCTGTGAAATATAACCAGTTTCAGGCTTTGGAGGTCTTAGTTCGATGGCTCCAGAGAAACTGCCAAAGACACGCTCAGAACCGCGAGAGAAGAATTCTGAACTGGCAGGACGAAGCAGGCAACACAATTCTCCACCTTTCTGCAGTTAAGTTGTTGTTAGATAGCAACATAGACATAAATGCCAAGAACTTTGAGGACTCGACAGCGTTGGACATAGTAGAGATTAACCAAACCCAGGCTGAAAGTGCAGAAACCAGAGACATGTTAGTGAGCAGTGGAGCTTTACGTGGCTTTTCACTTTCTAGCACAACACTCGTGGAAGAGCTACGAGCAAAAATCACATTCAATGAGAGAATAGCAATATCGGTGACTCGCCTGAGAAAGAGAATATCAAACGACACACGCAATGCTTTGTTGGTGGTGGCCATTCTTTTTGCTACAAACACTTACGAATCAGTGCGTAGCCCTCCCGGTGGAGTTTACCAAGGAGAGGGTAGTGTAATGGCTTCTGATAAGAAAATCAGCACATCATTCCAGCACAGTGAGTATGCAGCAATGCAAGAAATTACTGGGAAAGTGGTGATGAAAATGCATATCTTCAACTGGTTCTGGTCCTTCAATACATTCTCCTGTTATCTTTCCATTTTGATGATATGTTTTCTGATGCCACGAGGGCGAATCAGTGTTTTCGTCACCTTTCCACTTTCTATATTTTCTGGATGCTACGTCTTCTCCATGTTAGTGATATCACCCAGTTTCAGGTTAAACACTGCGACTGTGGTTCTGCCATGCGTCTTCACGCTCTTCTACGGTTGGGGAAGTTTCGTATACATTAGATTAGCCAAAAAACTTAAAATGTATGCACATAAACAGAAAGACACCTTCAAGTTTGTAGGAGGAAATAGATGGTAA 1347 0.4491 MNNSLVVAAQDGDVDLLYKLIQMQPYVLEHTDFMPFVDTPLHVAAAAGHASFATEVMRLKPSFAWKLNQCGLSPMHIALQNNHHRLVCRFVEINKDLVRIKGREGLTPLHVATQTGRIDLVAKFLSACPDSIEDVTVRSETALHIAVKYNQFQALEVLVRWLQRNCQRHAQNRERRILNWQDEAGNTILHLSAVKLLLDSNIDINAKNFEDSTALDIVEINQTQAESAETRDMLVSSGALRGFSLSSTTLVEELRAKITFNERIAISVTRLRKRISNDTRNALLVVAILFATNTYESVRSPPGGVYQGEGSVMASDKKISTSFQHSEYAAMQEITGKVVMKMHIFNWFWSFNTFSCYLSILMICFLMPRGRISVFVTFPLSIFSGCYVFSMLVISPSFRLNTATVVLPCVFTLFYGWGSFVYIRLAKKLKMYAHKQKDTFKFVGGNRW 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03059 448 Gene3D - 1 228 IPR036770 -
Vimu10g03059 448 Pfam Domain of unknown function 277 398 IPR026961 -
Vimu10g03059 448 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Vimu10g03059 448 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Vimu10g03059 448 SUPERFAMILY Ankyrin repeat 5 222 IPR036770 -
Vimu10g03059 448 SMART ANK_2a 184 206 IPR002110 GO:0005515
Vimu10g03059 448 SMART ANK_2a 104 134 IPR002110 GO:0005515
Vimu10g03059 448 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vimu10g03059 448 SMART ANK_2a 138 170 IPR002110 GO:0005515
Vimu10g03059 448 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vimu10g03059 448 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Vimu10g03059 448 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Vimu10g03059 448 Pfam Ankyrin repeats (3 copies) 101 159 IPR002110 GO:0005515
Vimu10g03059 448 PANTHER HOMEOBOX PROTEIN WARIAI 11 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03059 Vimu-Chr10 41483098 41484624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03059 4 416 Miscellaneous Gene Families AT5G15500 40.281 2.16e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03059 - - gmx:100790227 709.909