Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03055 ATGAGGAGCATACCCACCACAACAACCTCAACTTCAACCGCACCCACAGCCGCCACGTCATCATTAACCACTCCCCCGCCGCACCCCACGTGGCACTCTCCCGTTCCGTACTTGTTCGGAGGACTCGCCGCCATGCTTGGTCTCATAGCCTTTGCTCTCTTGATCTTGGCTTGCTCCTACTGGAAAATTTCTGGTGCTTTGGAGAACGAAGAAAACGGTGAAAGGAACATGGAGAATGGCGGCGGTGAGAAACAGGGTGATTCTGAGAACAAGGAATCTGTTACGGTGTACGAGGATAAGATTCTGGTCATTATGGCTGGAGATGAGAAACCCACATTCTTGGCCACCCCCAAAGCCTCCTCTGTTTCTCGTCCACTTCCCAGCCATTTTGAGCAAAGCCTCCAACACCACGTGGCTACTGAGAAATTAGAGAAAGAAATGGAAACCCATCTTCAACAACCTCAAGAAACGCAACATCAACAACAACAACAGACGCTCCAGAACCCAACAATTGGCGCCCACCGTGGGGCACAGTTTCAAGAATTCCAAACAGCAATGGCAACCAAGTTCGACGTAGAGAAGTTCAACGACTCTAATGATTTCGGGCTGTGGAAGATCAAGATGGAGGCTATCTTGATACAGCAGGGATGTGGTGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATGCCGTGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGAAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATATGGGCAAAACTGGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGTCTGAAGCAGCAACTCTTTGCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAAATTGCAGAATTCAACAAGATAGTTGATGATCTGGAGAATATTGAAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAGAACCTTCGAGCATTTTAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTGTGACGTCAATTCGGACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGGCAACCGAGGAGGGAGCGTCTGGATTGATCTCGGTGAAAGGGAAATGGAAGAAGCAGGCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGACGGTCGGTCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAATCTGCTGGAGTGCTGGTGGCTTCGTCTGAAGATTCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCACCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCGTGGAAATGTATTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCAGTGAGATTGAGGATGTTTGACAACCGAGAGATGGTGCTGCAAGATGTAAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTTCGTTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAAAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGAATACCGCCCGACTATATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGGCTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATATCGTTCGGTAAAGGGAAACACTCAACCGAACGTCCCTTTGAATATGTCCATGCTGACTTGTGGGGACCGGCAAGAACCTTAACTCATGTGTGGATTTACGTTCTAAAAAATAAGTCTGAGACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGTCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGGTTTTACAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGCTTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTTCGATGCATGTTGCTGGGATCAGGGTTGTCAAAGGCTTTCTGGGGAGAGGCTACTAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCCTCAGCACTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAAATGTATCTTTCTTGGATACGCCGAAGGTGTTAAGGGATACAGGTTATGGAGGTTAGATTCTAGACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCAATGCACCCTGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGTTGTTCGGTCATTGGATGAGGAAATCCGAACGGGTGAAGGGCAAGTTGAAAACGTTCGGATGATAGAGGAGAACCGAACGGATGAAATTCGAACAGACCTTGGTGATGATACAGATGGTATGTCTGGTGAGGGAAGTCATGGAAAAGCTGCTGGTAAACGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTTCTGCTTTATGTGGATGATATCCTGATTGCTAGCAGTGACAGGGGCATGATCGGTAAGACGAAAGCAAGGTTGGGGGATGCTTTCGAAATGAAGGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAAACATTAAAAGGGATAAACCGGGCGGTAATCTTTTTCTGTCTCAGAAGTGTTATTTGCAAAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAGTACACCGGTCGGTCAACACTTGAAACTTACCAAGGAACAATGCCCAAAGACCGAGGAGGAAAGAAGGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGACATGGTCTGCACAAGACCGGACCTGGCGCACGGTGTAAGTGTTCTCAGTCAGTTCATGATTAATCCTGAACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGATACTGGATTGTCTTTCCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCTGACTTTGCCGGATGCATGGACACTAGAAAATCCCGTTCGGGATATGTGTTTACGCTGTTTGGGACTGCTTCGGTTGTTGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCAGGAACTTGGTTTTAATAAAAAATCTGTATGTGTTCATTGCGACAGCCAGAGTGTCATTCATCTGGCCAATCATCAGATTTACCATTCCAGAACCAAGCATATTGACGTCAAGCTGCATTTTGTTAGAAGCATTGTAGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGACAACCCTGCAGATATGCTGACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTTTCTACCGGTCGCAAGTCTAGGTGGAGAATTGTTAAGACTTAGCTTCGTTGTTCGTCATAACGGCCGGTTTGTTATAACGGCCGCCCCAAGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCTAGGAGCGATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTAATGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGTAAAACTAGAGTCTCTATACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTTTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGGAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTAAATGCTCTTCCCAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGACTGATCGCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAATGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGACGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAATCTGGACCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGCTGCAGGCCGTCCGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGACTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGAAAATCACACAGGACACCGTTCGGAAAAGGGAAACACTCAACCGAACGGCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAGAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAACAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGATTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGGCCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCAAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTGTGGAGGTTAGATTCACCTGCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGTACGCCCGGTGGGACTGAGGAAAACCAAACAGGTGAAGGGCAAGTTGAAACCGGTCGGTCGATAGCTGAAAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAACTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGACCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGCTGGAGGCTTTGAAAAAGAATAACACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCGTAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTACCATGAGATTTTTGCTCCAGTGGTTAAGCACTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCACATTGCAATTTGCATCTTGAACAGTTGGACGTCCGGACGGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGGCGGTGAAATGTTATATCTCTTGCTTTATGTGGATGATATCCTCATTGCTAGCAGTGACAGGGGCGTGATCGGTGAGACGAAAGCAAGGTTGGCGGACGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGATTCTAAAATGGCCAACACACCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAATGGATGCTCAGATACATACGGGGGTCTCTCGGTACTGGATTGTATTTTCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCTTGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACGGCCGTTAGCTGGAGGTCTACACTACAGTCGGTAGTGGCTTTGTCAACTACGGAAGCCGAGTATTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTCGGTTTTGATCAGAAGTCTGTATGCGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGAGTTATCATTCCAGAACCAAACATATTGACGTCAAGCTACACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 7941 0.4697 MRSIPTTTTSTSTAPTAATSSLTTPPPHPTWHSPVPYLFGGLAAMLGLIAFALLILACSYWKISGALENEENGERNMENGGGEKQGDSENKESVTVYEDKILVIMAGDEKPTFLATPKASSVSRPLPSHFEQSLQHHVATEKLEKEMETHLQQPQETQHQQQQQTLQNPTIGAHRGAQFQEFQTAMATKFDVEKFNDSNDFGLWKIKMEAILIQQGCGEALKGESKMSDAVTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFAFKMSESRTIEEQIAEFNKIVDDLENIEVKLEDEDKAVILLNALPRTFEHFRDALLYGKDQVITLEEVVTSIRTKEFQKLQDSKATEEGASGLISVKGKWKKQAGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKDGRSQETADVAEASEGYESAGVLVASSEDSQRSWVMDSGCTYHMCPVKEFFENLDQKERGNVLLGNNKACRVQGVGSVRLRMFDNREMVLQDVRYVPELKRNLISISSFDLGGYTTKVEDGVMRVCSGDSVVAKGKRRNGLYILEGSTVIEYRPTIWHLRMGHISEKGLEELEKQGLLLGDKLQKLDFCDHCVLGKSHRISFGKGKHSTERPFEYVHADLWGPARTLTHVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFYKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEATNTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAAKCIFLGYAEGVKGYRLWRLDSRPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGVVRSLDEEIRTGEGQVENVRMIEENRTDEIRTDLGDDTDGMSGEGSHGKAAGKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDRGMIGKTKARLGDAFEMKELGEARRILGINIKRDKPGGNLFLSQKCYLQKVISRYRMAESKMASTPVGQHLKLTKEQCPKTEEERRKMESVPFSNGIGSIMYDMVCTRPDLAHGVSVLSQFMINPEPTHWEALKWMLRYIRGSLDTGLSFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTASVVALSTTEAEYYALAEGVKEALWLKGLVQELGFNKKSVCVHCDSQSVIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEDNPADMLTKPLAKERFLLLLSRIGFLPVASLGGELLRLSFVVRHNGRFVITAAPRTQQLAPTVGQGFKNSLGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCNEALKGESKMSDTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWVKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIGVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLIAVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNDLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRTPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPAKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVETGRSIAENRSDEFRTDLGDDTDGMSGEGSHGKTAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDLNRPDEPRSYKEALDSSDRHLWQGAMEEELEALKKNNTWRLVDLPKGKKVVGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILIASSDRGVIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLQKVISRYRMADSKMANTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLYFQNNFQGGGYIEGFVDSDFAGCLDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQSYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 2646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03055 2646 Pfam GAG-pre-integrase domain 1698 1764 IPR025724 -
Vimu10g03055 2646 Pfam GAG-pre-integrase domain 586 627 IPR025724 -
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 2052 2073 - -
Vimu10g03055 2646 Pfam Integrase core domain 1777 1878 IPR001584 GO:0015074
Vimu10g03055 2646 SUPERFAMILY DNA/RNA polymerases 2155 2598 IPR043502 -
Vimu10g03055 2646 Pfam gag-polypeptide of LTR copia-type 238 368 - -
Vimu10g03055 2646 Pfam gag-polypeptide of LTR copia-type 1366 1495 - -
Vimu10g03055 2646 ProSiteProfiles Integrase catalytic domain profile. 693 788 IPR001584 GO:0015074
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 153 167 - -
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g03055 2646 SUPERFAMILY DNA/RNA polymerases 948 1222 IPR043502 -
Vimu10g03055 2646 SUPERFAMILY Retrovirus zinc finger-like domains 403 433 IPR036875 GO:0003676|GO:0008270
Vimu10g03055 2646 ProSiteProfiles Integrase catalytic domain profile. 1775 1941 IPR001584 GO:0015074
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 72 92 - -
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 1511 1533 - -
Vimu10g03055 2646 Gene3D - 404 437 - -
Vimu10g03055 2646 SUPERFAMILY Ribonuclease H-like 640 797 IPR012337 -
Vimu10g03055 2646 SUPERFAMILY Ribonuclease H-like 1777 1950 IPR012337 -
Vimu10g03055 2646 ProSiteProfiles Zinc finger CCHC-type profile. 411 427 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 2026 2081 - -
Vimu10g03055 2646 CDD RNase_HI_RT_Ty1 2492 2630 - -
Vimu10g03055 2646 Pfam Zinc knuckle 411 427 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 Pfam Zinc knuckle 1539 1555 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 2029 2051 - -
Vimu10g03055 2646 ProSiteProfiles Zinc finger CCHC-type profile. 1539 1555 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 Gene3D - 635 797 IPR036397 GO:0003676
Vimu10g03055 2646 Gene3D - 1772 1950 IPR036397 GO:0003676
Vimu10g03055 2646 Gene3D - 1515 1568 - -
Vimu10g03055 2646 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2156 2398 IPR013103 -
Vimu10g03055 2646 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 942 1030 IPR013103 -
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 144 167 - -
Vimu10g03055 2646 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g03055 2646 PANTHER GAG-POL-RELATED RETROTRANSPOSON 1710 2642 - -
Vimu10g03055 2646 SMART c2hcfinal6 411 427 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 SMART c2hcfinal6 1539 1555 IPR001878 GO:0003676|GO:0008270
Vimu10g03055 2646 Coils Coil 299 326 - -
Vimu10g03055 2646 CDD RNase_HI_RT_Ty1 1124 1254 - -
Vimu10g03055 2646 SUPERFAMILY Retrovirus zinc finger-like domains 1530 1560 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03055 Vimu-Chr10 41451711 41465854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03055 2121 2600 Receptor kinase-like Gene Family AT4G23160 36.885 1.93e-91 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03055 - - bna:106351154 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03055 10 41451711 41465854 Vimu10g03055 10 41451711 41465854 ECH