Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03044 ATGGCTGTTATAGTGCCCCGTTCTTCTACTTCTTGTTGTGCTTTGGGTGACACCAATGTTTATGCTTTGAGCAATAATGGATTCTTTGGAGGAACTCCATTCGTCAAAATGAAATCTTTGCCAAATGGGTCTTTGGTAAATTGGAAGAAACATGGAAAAAGACAATTGGGTATTCGTGTCTTAGAGACAAGATGTGCCCCTGAAGTGGTTGCAGTAAATGGCACGAGCAAAACTAGAGTGTCTTCTGAAGAAGTCATCGGCGTTTTGAAGTCAATTCTGGATCTCAATTCTGCTCTTTCATATTTTAAGATGATTTCCCAGTTGCCTAATCTTGTGCATACACCTGAAACATGTAATTACATGCTCGAGTTCCTGAGGGTTCATGGGAGAGTTGAGGATATGGTTTTTGTTTTCGATTTTATGCAAGAGCAAGTGATTAACAGGAATCCGAATACATTTCTGACTATCTTTAAGGCTCTTTCGATTAAAGGTGGGATTCGACAAGCACCATTTGCACTTGGAAAGATGAGGCAAGCTGGGTTTGTCTTGAATGCTTATTCATATAATGGACTGATTCATTTCCTGCTCCAACCTGGCTTTTGTAAAGAGGCTTTGAAGGTTTACAAAAGAATGATCTCGGAAGGGATGAAACCTAGTATGAAGACTTACTCAGCGTTAATGGTAGCATTGGGGAAGAGGAGGGAGACCGAAACCATTATGGATTTATTGGAAGAGATGAAAACATTAGGTTTGAGGCCAAATATATACACATACACCATATGTATTAGAGTGCTTGGGAGGGCAGGGAGAATCGATGATGCGTATGGGATTTTAAAGACAATGGAGGATGAAGGATGCGGACCTGATGTTGTCACTTATACAGTTCTAATTGATGCGCTTTGTGCTGCAGGGAAACTTGATAAGGCCATGGAATTGTACTCAAAGATGAGAGCTAGCGGTCACAAACCGGATCAGGTGACTTACATTACTTTAATGGGCAAGTTCAGCAATTATGGCAACTTGGAAATGGTGAAAAGATTCTGGAATGAGATGGAGGCTGATGGTTATGCTCCTGATGTGGTTTCCTACACTATAATCGTTGAGGCTTTATGTAAGTCAGGAAAAGTTGATCAGGCATTTGATATATTAGATGTGATGAAAGAGAAAGGAATTTTTCCAAATCTTCATACTTACAACACGTTGATCTCTGGACTTTTGACCCTGAAAAGATTAGATGATGCATTAGAGCTTTTCAGCAATCTGGAATCTTTGGGTGTTGAACCAACTGCTTATTCATACGTTCTTTTTATTGACTACTATGGAAAGTTGGGTGATCCTGAAAAAGCTCTTGACACCTTTCAAGAAATGAAAAAGAGAGGTATTTTGCCTAGTATAGCCGCATGTAATGCATCCTTATATAGTCTAGCTGAAACAGGTAGGATCAGAGAAGCAAAATATATATTTAATGATCTTCACAAGTGTGGGCTTTTACCTGATTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGGCAAATAGACAAATCCACAAAACTTTTGACTGAGATGTTAAGTGAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGACCGAGTTGATGAGGCATGGAAAATGTTTGGGAGACTGAAGGATTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAAGGAAAACTCCGGAAAGCCCTTGATTTGTTTGGGAGTATGAAGGAGTCTGGATGTCCTCCAAACACGGTGACTTTTAACGCACTCCTTGATTGTCTTTGCAAGAATGATTCAGTTGATTTGGCTTTGAAAATGTTCTGTAGAATGACAATCATGAACTGTAGTCCTGATGTTCTGACTTATAACACTATTATCTATGGTTTACTCAAAGAAGGCAGGCCTGATTATGCATTCTGGTTTTATCATCAAATGAAGAAATTTCTCTCCCCTGATCGTGTAACTTTGTACACCCTCCTTCCTGGTGTTGTAAAGTATGGAAGTATTGAAGATGCAATCAAGATTGTCATGGAATTTGTCCATCAACCTGGTTCACAGACAAGTAGTCAATTCTGGGGAGAATTAATGGAATGTATTTTGATTGAAACAGAAATAGAAGGGGCCATTTCATTTGCTGAAGGATTGGTGTGCCATTCTATTTGCCTAGATGATAATTTGATAATACCTTTGATTAGACTCCTGTGCAAGCAGAACAAGGCTCTGCATGCTCAAAATTTGTTTGAAAAATTCACCAAAACTTTTGGAGTTCACCCTTCCTCGGAATCATATAATTGCTTGATAGATGGGCTTCTTGGAAGTAATATCGCTGAACCAGCTTTCAAACTTTTTATTGAGATGAAGAATGCGGGTTGTTGCCCAAATATTTTCACCTATAACTTGCTGCTTGATGCTCATGGTAAATCAAAGAGGATTGATGAACTTTTTGAACTGTACAATGATATGCTCTATAGGGGATGCAAGCCAAATACTATAACCCATAATATCGTCATCTCTGCCCTTGTGAAATGTAAAAACTTAAATAAGGCATTAGATTTATACTATGATCTCGTAAGTGGTGATTTCTCTCCCACTCCTTGTACATATGGCCCTCTTATAGACGGCCTTTTAAAGGATGGAAGATTAGATGAAGCAATGAATATTTTTGAGGAGATGACAGACTATCATTGCAAGCCCAACTGTGCTATTTATAATATTCTCATCAATGGATTTGGGAAAGCAGGTAACGTTGACGTTGCTTGTGATTTATTCAAAAGGATGGTTAAGGAAGGGATACGGCCAGATTTAAAATCTTATACCATTCTTGTAGAATGTCTGTGCATGAATGGCAGAGTTGATGATGCTCTGCACTACTTTGAGGAACTAAAGTTGACTGGCCTTGACCCTGATACTGTTTCTTACAATCTTATGATCAATGGCCTTGGAAAATCGCACAGGTTTGAGGAAGCTCTTTCTCTTTTCAGTGAAATGAAGAATAGGGGAATCACTCCTGATCTTTATACCTACAATTCATTGATTCTCCATTTTGGAAATGCTGGAATGGTGGACAGAGCCGGAATGATGTTTGAGGAACTGCAGCTTGTGGGTCTTGAACCTAATGTCTTCACTTACAATGCTCTCATTCGTGGGCATACTATGTCAGGGAACAAAGATCGAGCCTTTTCTGTACTCAAAAAGATGATGGTTGTGGGATGTAGCCCTAATGCAGGAACATTTGCTCAATTGCCTAATAAATGTTGA 3321 0.3902 MAVIVPRSSTSCCALGDTNVYALSNNGFFGGTPFVKMKSLPNGSLVNWKKHGKRQLGIRVLETRCAPEVVAVNGTSKTRVSSEEVIGVLKSILDLNSALSYFKMISQLPNLVHTPETCNYMLEFLRVHGRVEDMVFVFDFMQEQVINRNPNTFLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIHFLLQPGFCKEALKVYKRMISEGMKPSMKTYSALMVALGKRRETETIMDLLEEMKTLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAMELYSKMRASGHKPDQVTYITLMGKFSNYGNLEMVKRFWNEMEADGYAPDVVSYTIIVEALCKSGKVDQAFDILDVMKEKGIFPNLHTYNTLISGLLTLKRLDDALELFSNLESLGVEPTAYSYVLFIDYYGKLGDPEKALDTFQEMKKRGILPSIAACNASLYSLAETGRIREAKYIFNDLHKCGLLPDSVTYNMMMKCYSKAGQIDKSTKLLTEMLSEGCEPDIIVVNSLIDTLYKADRVDEAWKMFGRLKDLKLAPTVVTYNILLTGLGKEGKLRKALDLFGSMKESGCPPNTVTFNALLDCLCKNDSVDLALKMFCRMTIMNCSPDVLTYNTIIYGLLKEGRPDYAFWFYHQMKKFLSPDRVTLYTLLPGVVKYGSIEDAIKIVMEFVHQPGSQTSSQFWGELMECILIETEIEGAISFAEGLVCHSICLDDNLIIPLIRLLCKQNKALHAQNLFEKFTKTFGVHPSSESYNCLIDGLLGSNIAEPAFKLFIEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNDMLYRGCKPNTITHNIVISALVKCKNLNKALDLYYDLVSGDFSPTPCTYGPLIDGLLKDGRLDEAMNIFEEMTDYHCKPNCAIYNILINGFGKAGNVDVACDLFKRMVKEGIRPDLKSYTILVECLCMNGRVDDALHYFEELKLTGLDPDTVSYNLMINGLGKSHRFEEALSLFSEMKNRGITPDLYTYNSLILHFGNAGMVDRAGMMFEELQLVGLEPNVFTYNALIRGHTMSGNKDRAFSVLKKMMVVGCSPNAGTFAQLPNKC 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03044 1106 Pfam PPR repeat 882 913 IPR002885 -
Vimu10g03044 1106 SUPERFAMILY HCP-like 864 1087 - -
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 548 729 IPR011990 GO:0005515
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 434 547 IPR011990 GO:0005515
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 66 234 IPR011990 GO:0005515
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 739 867 IPR011990 GO:0005515
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 669 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 955 989 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1025 1059 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Vimu10g03044 1106 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 751 1003 - -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 638 684 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 919 967 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 989 1033 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 498 535 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 358 405 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 568 617 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 222 265 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 814 863 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat family 288 334 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 990 1024 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Vimu10g03044 1106 SUPERFAMILY HCP-like 404 630 - -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat 186 215 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat 783 812 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat 538 564 IPR002885 -
Vimu10g03044 1106 Pfam PPR repeat 432 461 IPR002885 -
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 868 984 IPR011990 GO:0005515
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 235 350 IPR011990 GO:0005515
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 885 919 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vimu10g03044 1106 Pfam Pentatricopeptide repeat domain 1049 1101 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1060 1094 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 351 424 IPR011990 GO:0005515
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 985 1054 IPR011990 GO:0005515
Vimu10g03044 1106 Gene3D Tetratricopeptide repeat domain 1055 1106 IPR011990 GO:0005515
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 920 954 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Vimu10g03044 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 256 290 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 992 1025 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 606 640 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 887 921 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 642 668 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 1027 1061 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 923 955 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 852 885 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 501 535 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 186 219 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 783 816 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 1062 1096 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 431 464 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 537 569 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 958 991 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 817 851 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 571 605 IPR002885 -
Vimu10g03044 1106 NCBIfam pentatricopeptide repeat 291 324 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03044 394 992 Glycosyltransferase AT1G05670 25.738 3.53e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03044 - - gmx:100778358 1967.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03044 10 41343721 41348199 Vimu10g03044 10 41343721 41348199 ECH