Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03038 ATGGATCACATCGGTTCGAGCAAGGATGGCACAAAGACAGGGATGGCCACCGCGATGATGGATATCGACGGTGACAGCGACGACGACGATCTCGGTGACCTTGACCCGACCAACGCCGAAATCCTTGAAGAATTCGGCGGAGAGGACGCGTTCCGGTACCACTGCAAGAAGTTCTCGGTACTGTTCTTCGAGGAGTACGGTCTGATCAGCCACCAAATAAACTCCTACAACCACTACGTCAACGTCGGCCTCCAGAGAACTTTCGACGGCTTCGGTGACTTGGTCGTAACGCCCGGCTTCGACCCTTCCAAGAAAGGAGATAACGAGCACTACCGCTACGCCTCCATCAAGTTCGGCAAGATCAAGCTCGACAAGCCCATGGTCTGGGGCGGTGAGTTAAACAACCAGGAGTTGAAGATGCTTCCGCGACACGCACGGCTTCAGAGGATGACCTACGCATCCAAAATGAAAATCGTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGATTCGGAGTGATAAGTTCAAGACTGGGAAGGAAGAGTTCCTTGATAAGGAGATTCTGACGGAAGACGAGAGGGAGATCATCATTGGCAAATTGCCTGTCATGGTCAATTCAGATTTATGTTGGATGAAAGGGGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATCAAGGGTGCCGAGAAGGAGCAACTGTATCTAAAGAGGCTTTGGGTTATAAACAGTCCAGGTTGGATGATTGCGTACAAGTCACAGATGAAGAGGAATAGGATGGTTATTAAACTGGTAGGAAATTCTAGGAATGAAGGAGGGGAGAATGGAGACATGTTTCTTAGTGTGTATTTTCTATCTGTTGAGGTTCCTGTGTGGGTACTGTTCTTCGCACTTGGTGTCGGATCTGATAAAGATGTTGTAGATCTCATTGGTTGTGACAATGATGATGTTAGAATTCAGAATATTCTCCTTGCTTCTGTTTGTGATGCTGATGAGAAATGTGGCGCATTTCGGAGGGGTAGGAATGCAGTTCAATATTTAGAGAAGTGTATAAAGGGTGTCCAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATTTATGTCTTTCCTGGAATCAGCGGCTTAAACAGAAAGGCACGTTTCCTTGCATATATGGTGAAGGGTCTTTTGCTGGCTTATACTGGCCGCAGAAAATGTGACAACAGGGATGATTTCCGTAATAAGAGGCTTGAATTGGCCAATGAGCTTCTTGAGCGTGAGTTGAAAGTGCATATAGCACATGTTCGGAAGAGAATGTCCAAGGCACTGCAAAGGGATCTCTATGGAGATAGAGATGTACGCCCCATTGAGCATTATGTTGATGCGTCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACCGGAGCATGGTCACATCCGTACAAGAGGATGGAAAGGATCTCTGGTGTGGTTGCAACTGTTGGGCGCACTAATCCCTTACAAACCATGGCCGAGCTAAGAAGAGCAAGGCAGCAAGTTCAGTACACGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACGGGACTAGTAAGCACTGATGTATCAAATGCATCTGAATCTATACTGCCTACATTGTTGGATTGTGGGATGGAAGAACTTGTCAATGATACTAAAACTCATCTGGGAAACAAGGACAAAGTCTTCCTAAACGGTGACTGGGTTGGAGTGTGCCCTGATTCCAGTTGGTTTGTGGCTGAGCTACGAAGTAAAAGACGAAAAAATGAACTGCCCCATCAGGTGGAAATAAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTAGTAGTTGGTAATCTACTAAAAATTAAAAGATTTAAATCAGAACGTTATTCTTTCCTTACTTTACTGGAAGAAGGTGTTGTTGAGCTAATTGGACCCGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGCGTTCAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTCAAGTACACGCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGTTGTTCACTTGTCCCATTTGCCAATCATGACCATGCAAGGAGGGTGCTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATATTAGAGTTGATACTTTGTCTCATCGTTTACACTATCCCCAAAGGCCCCTTTTTCAAACAATGACTTCAGATTGTCTTGGAAAACCAACTTATCCACTGGGTCAAAGTAAAATACATCCAAAGGCGGAATTCTATAATGGGCAGAACGCAATTGTGGCTGTCAATGTACATCTAGGATACAATCAAGAAGATTCCTTGGTGATGAATCGGGCTTCATTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATTGATAATAAGGATTCTTCAGAGAAGAAGCGCAAACCTGAAGGCAATATAAATTTTGGAAAGCTTCAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAATTTGCAAAGTGGTGATATTATTATTGGGCGGTGTGCTGAGTCTGGTGCAGACCATAGTGTGAAGTTAAAGCACACTGAAAGGGGTTATGTACAAAAGGTTGTGCTGTCTTCAAATGACGAGGGGAAAAATTTTGCTGCGGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGATAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACTAGACAAGGCATTGTTCCTGATATTGTCATTAATCCGCATGCCTTTCCCTCGCGACAAACTCCTGGCCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACGCCTTTTTCCACTCCTTCTGTTGATGCCATTACTGACCAGCTTCACAGATGGGGAAACGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGTCTGAAGACAAGGTGAAATTCCGCAACACCGGTCCTGTTCACCCTTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGCGATTGCTTGATAGCTCATGGTGCTTCAGCCAACCTGTATGAACGCCTCTTTACACTCAGTGACTCGTCTCAGATTCACATCTGCACCCACTGCAAAAATTTTTCAAATGTGATCTTGCGGCCAGTCTCTGGTGGCCGGAAAGTACGAGGACCTTATTGCCGCCACTGTGAATCCGCTGATGACATTGTGGTTGCCCATGTTCCATACGGAGCAAAATTGTTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3576 0.4455 MDHIGSSKDGTKTGMATAMMDIDGDSDDDDLGDLDPTNAEILEEFGGEDAFRYHCKKFSVLFFEEYGLISHQINSYNHYVNVGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYASIKFGKIKLDKPMVWGGELNNQELKMLPRHARLQRMTYASKMKIVVKVQVYVPKKIRSDKFKTGKEEFLDKEILTEDEREIIIGKLPVMVNSDLCWMKGEKDDCEFDHGGYFLIKGAEKEQLYLKRLWVINSPGWMIAYKSQMKRNRMVIKLVGNSRNEGGENGDMFLSVYFLSVEVPVWVLFFALGVGSDKDVVDLIGCDNDDVRIQNILLASVCDADEKCGAFRRGRNAVQYLEKCIKGVQFPPPESIEECLEIYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELANELLERELKVHIAHVRKRMSKALQRDLYGDRDVRPIEHYVDASIITNGLQRAFSTGAWSHPYKRMERISGVVATVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLDCGMEELVNDTKTHLGNKDKVFLNGDWVGVCPDSSWFVAELRSKRRKNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKRFKSERYSFLTLLEEGVVELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNIRVDTLSHRLHYPQRPLFQTMTSDCLGKPTYPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKDSSEKKRKPEGNINFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICTHCKNFSNVILRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03038 1191 Gene3D RNA polymerase Rpb2, domain 2 247 403 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 CDD RNA_pol_B_RPB2 68 1187 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 5 669 713 IPR007647 GO:0006351
Vimu10g03038 1191 FunFam DNA-directed RNA polymerase subunit beta 403 594 - -
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 3 493 551 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 Coils Coil 411 431 - -
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 6 722 1088 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 2 280 415 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 ProSitePatterns RNA polymerases beta chain signature. 946 958 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 Gene3D - 723 1074 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 FunFam DNA-directed RNA polymerase subunit beta 823 942 - -
Vimu10g03038 1191 FunFam DNA-directed RNA polymerase subunit beta 1075 1189 - -
Vimu10g03038 1191 Pfam RNA polymerase beta subunit 67 463 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 Gene3D RNA polymerase alpha subunit dimerisation domain 1075 1189 - -
Vimu10g03038 1191 FunFam DNA-directed RNA polymerase subunit beta 60 240 - -
Vimu10g03038 1191 Gene3D - 61 236 - -
Vimu10g03038 1191 Gene3D - 404 589 - -
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 4 591 651 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vimu10g03038 1191 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 54 1188 - -
Vimu10g03038 1191 Gene3D - 753 942 IPR014724 GO:0003899
Vimu10g03038 1191 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 61 1185 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu10g03038 1191 Pfam RNA polymerase Rpb2, domain 7 1090 1188 IPR007641 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03038 Vimu-Chr10 41311256 41316512 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03038 K16252 - gmx:100815934 2137.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03038 10 41311256 41316512 Vimu10g03038 10 41311256 41316512 ECH