Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03024 ATGCAGCAAGTAGAGAGCTTCCTATCAAAGGTTGAACAGTCACCTTCAAACTCTATGCAAATTGCACTCTCTCCATCATTGAAAGCATTGATTGCAGACAAACTTCTGAGGCACTCAGATGATGATGTCAAAGTCGCAGTTGCCTCTTGCATCACTGAAATAACAAGAATCACTGCACCTGATGCTCCTTATGATGATGATCAAATGAAGGAGGTCTTTCAATTAATAGTATCTTCTTTTGAAAATCTACATGATACATTAAGTCGATCATATGCAAAGAGGACCTCAATTCTTGAAACTGTTGCAAAAGTCAGATCATGTGTTGTAATGCTGGATCTTGAATGTGATGCCCTGATTTTGGAGATGTTTCAGCATTTCTTTAAAGCAATAAGGGAATATCATCCAGAAAATGTTTTTTCATCCATGGAAACAATTATGACCCTTGTTCTAGAGGAAAGTGAAGATATATCCTTAGACCTGCTGTCTACACTTCTGGCCAGAGTTAAAAAAGATGACGAGGAAGCTTTTCCAATTGCCAAAAAATTGGGTGAGAGGGTCCTTGAAAGTTGTGCAACCAAGCTTAAACCCTATTTGGGTCAAGCAGTGAAATCCTTGGGTATACCTATGGGTGATTATAGTTTGGTACTTTCTTCAATATGCCAAGACACATCTGATGCCTTGGAGAAAAATTATACATGTGTTACAAGTGAGCAGACGGAAGATAAGAGTGAGTTGGCAAAACGACCACGTGAGGAGTCAGCACATGTAGTAGAAAAGGATCCAAGGGAAGTTAGTAGTCCCTCTAAACAAGAAAATCCTGATGTGAATATATCTCCAAAGTCAGTCATGAGCAATGGTGTTGCATGCGTCGAAGAAGGTACTGCTTTAACTAATTCCAAGTCCACTAAAAAGCAAGAGGATGCTGAATGCTCTAATCACTCTGAAGGTTTGAATATATCTGGTCATGAGGTGTGTAATGATTTAGACTCTGAAAAAGTTGACAATAGTAAAAGTAAGCCAGAACAATCTACCAAGAGACGACGGAAGAAATCAAGCTCTTCAACTAAATCTGCGAAACTTTCCAAGGGTCAAGTTGCTGCTAATGATAAGGAAACTGAGAAAAAGCTTGACCACGAAAACAACAGCAAGAAAGTACCCAGTTCCCCTCACGAGGACCATTTTGTTGAAGCAGCAGGACCTTCAGAGAATGACAAAGAGGTTGATGCTAAGACTTTATCATCAAAGGTATACAACAATGAACCTGGAGTTGCTTCTCCACTAAGTGAGAACCTCCATGATGAAAATCGATTGAAGAAACTTGGACGAACAAAAAGGAAAGATGGCCCTGTAAAAGATGTGGCTGGAGAGGATGTTTCTAAGGTTTCTGGAGGAGGAGCTAGTGATTCAGAAGCCAAACCTTCGAGGCGGTCAATGAAAAAGGCACTTGGTCAGAGCTCTGTGAGAAAGGCTAGTGTTGTAGATTCAGTTAAAAAAGGAAGTGGGGCTGCAACTGATGTAGATGCTAAGAAGCATTCAGCAAAGAAATTAGATGAAAACAAAAAGGGTACTGGCGGGTCCTCTTCAAAGCAGATTGGGGACAAGAAAAAGGGAGGGAGGACGAAAGCTAACCCTGAAACAGATCTAGCAAAATCAACTGCTACCAATGTGGACAGGGAAGTGGTTTCTTCTCCAAGGCCTGGTACAAAGTCAACTAAAGACGAAAGTTCGGAGGAGACTCCCAAGGCAAATGTGAAAAGGAAACGCAGTTCAGGAAAAGAAAATGAGTCTGATGTGAAGGACTATGGTGAAAACCTTGTTGGTTTACGAGTCAAAGTTTGGTGGCCTGAGGATCAGGAGTTTTACAAAGGTGTTATTCATTCTTTTTATTCTGGCAAAAAGAAGCACAAGGTCTTGTACGATGATGGTGATGAAGAAACATTAAATCTCTTGAAGGAAAAATGGAAGTTAATTGAAGCTGGCTCAGATGCAGATGAGGAAGGACAAAGTGATCGTGAAAGTCTTGATGCTTCCACTGATATGCCACCGAAGAAGAAAGGGAAAACCAGTGCTGGTGAATCAACCAAGCAAGGAAAGGTGGACGGTTCTTCCAAAAGTGGTGGAGCAGCAGCATCCAGTAGATCAAAGGGTGCATCCATGAAGTCTAGCCAAAAGTCCAAAGATGGAAACAAATCCAAAGATTCCAAGACTATTAGCAAATCTGAGGACCGAGCTAGCAGAAAATCTAAGGACGGTACTCCTAAAAGTGGTGGCAGTAAAATTGTTGCCGCTGCCGTTAAGAAAATGGGTAATAAATCCAAAAGCTCTGATACTTCCAAGGCTAACGAATCAAAGGATGATGACACTAGCAAGCCAAAATCTGCTGCCAAGTCTAAGCAAGAAACTCCAAAAGGTGGGAAATCCAAGCAAGAAACCCTGAAGTCTGCCATTTCTAAAGGAAAACCTCTTAAAGGTGGTGGAAAGAGTGATGTTAATGGTACTGGTAAGATGAAATCTGGTTTAAAGAGAAAATATGCGGAGGATGAAAACTCAGATGCTTGA 2559 0.4111 MQQVESFLSKVEQSPSNSMQIALSPSLKALIADKLLRHSDDDVKVAVASCITEITRITAPDAPYDDDQMKEVFQLIVSSFENLHDTLSRSYAKRTSILETVAKVRSCVVMLDLECDALILEMFQHFFKAIREYHPENVFSSMETIMTLVLEESEDISLDLLSTLLARVKKDDEEAFPIAKKLGERVLESCATKLKPYLGQAVKSLGIPMGDYSLVLSSICQDTSDALEKNYTCVTSEQTEDKSELAKRPREESAHVVEKDPREVSSPSKQENPDVNISPKSVMSNGVACVEEGTALTNSKSTKKQEDAECSNHSEGLNISGHEVCNDLDSEKVDNSKSKPEQSTKRRRKKSSSSTKSAKLSKGQVAANDKETEKKLDHENNSKKVPSSPHEDHFVEAAGPSENDKEVDAKTLSSKVYNNEPGVASPLSENLHDENRLKKLGRTKRKDGPVKDVAGEDVSKVSGGGASDSEAKPSRRSMKKALGQSSVRKASVVDSVKKGSGAATDVDAKKHSAKKLDENKKGTGGSSSKQIGDKKKGGRTKANPETDLAKSTATNVDREVVSSPRPGTKSTKDESSEETPKANVKRKRSSGKENESDVKDYGENLVGLRVKVWWPEDQEFYKGVIHSFYSGKKKHKVLYDDGDEETLNLLKEKWKLIEAGSDADEEGQSDRESLDASTDMPPKKKGKTSAGESTKQGKVDGSSKSGGAAASSRSKGASMKSSQKSKDGNKSKDSKTISKSEDRASRKSKDGTPKSGGSKIVAAAVKKMGNKSKSSDTSKANESKDDDTSKPKSAAKSKQETPKGGKSKQETLKSAISKGKPLKGGGKSDVNGTGKMKSGLKRKYAEDENSDA 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03024 852 SMART TUDOR_7 602 661 IPR002999 -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 570 602 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 366 411 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 545 569 - -
Vimu10g03024 852 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 262 800 IPR039776 GO:0007064
Vimu10g03024 852 SUPERFAMILY ARM repeat 23 211 IPR016024 -
Vimu10g03024 852 Pfam Sister chromatid cohesion protein PDS5 protein 2 200 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 503 522 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 725 753 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 431 454 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 235 282 - -
Vimu10g03024 852 Gene3D - 597 651 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 658 691 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 692 724 - -
Vimu10g03024 852 SUPERFAMILY Tudor/PWWP/MBT 604 645 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 777 807 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 296 602 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 325 341 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 268 282 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 658 852 - -
Vimu10g03024 852 CDD Tudor_Agenet_AtEML-like 606 656 - -
Vimu10g03024 852 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03024 Vimu-Chr10 41131738 41139120 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03024 - - gmx:106794129 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03024 10 41131738 41139120 Vimu10g03024 10 41131738 41139120 ECH