Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03023 ATGCACGTAACCAAATCAAGTATCCTATCATGTTATGACACACTAGACTCGTCCGGACTTAGAATGAATATCGATCTGGGGTGGGTTGTGCACTTGTGGTGGCCTCTACTGCTTTGCAAAGTCATTGCCGAGGGGTTTCATCCGACCACACACAAGGCCTCCAGTGATAGCGCATACCCTATGACCTCCTACTACTCTCACCACACACGTCAATCCTCTCTAAGTGAGAATGAAAGACCGTTAGACCCCAATATGTCCCAATTGCCTTACTTAGACCACCCAAATCAACCAGAATTACCTGCAGTATCTAACTCTCCATATGACTACCTCACCCACTACGTTGTGATAGCAAAAGCACAACTTAATCAGAAATCTGATGGCTCAATGATGAAGGAAATCAAAGAGAAGGGCATTAATGGAGTGAAGCATAGGAAAGTGGTGAGAGTCCCTGTAAAACCAGAAAAAGCAGAGAGGACACAACCAATGGCGTCTGCAGATAAACGATTGGAAGAACAACTTCTCGAAGCCGGTAAAAAGCTCGCAAACCCTCCGTCTTCTGCAGAGGAGCTTCTCTCACTCTTAGAGGCCAACTTGTTGCTGATATTGTGTGGCTTTGATGCTTTGTTAGATTTTGTTGGAAACAACGAGTACATGGAATTTTTTATTTTAGTTATTATTCTACAACATCATCTGGTTTGGGTTCGATGGCATAGGTGTCAGCGTAATCGATGGTTTGGAGTGGTGCCAACTGCCAACAGTGATGCCAGGTATGAGGATGTCGGACTTGGTTGTAGTAGTGTTGGCAGGGGTGTTGCAACTCAAGTAGAAAGTTGCCTTTCAAGGGTTGAACAGTCACCAACAGTTTCTATGCAAAATGCACTCTCTCCATCATTGAAAGCAATGGTTGGTGACCAACTTTTAAGGCACTCAGATAATGATGTCAAAGTTGCAGTTGCCTCTTGCATCAGTGAAATAACAAGAATCAGTGCACCTGATGCTCCTTATGATGATGATCAAATGAAGGAGGTCTTTCACCTGATAGTATCTTCATTTGAAAATTTGCATGACAAGTTAAGTCGATCATATGCCAAGAGAATGTCAATTCTGGAAACTGTTGCAAAAGTCCGATCCTGTGTGGTAATGCTGGACCTTGAGTGTGATGCCTTGATTTCGGATATGTTTCAACATTTCTTGAAAGGTGTAAGGGAACATCATCCAGAAAATGTTGTTTTGTCCATGGAAACAATTATGACTGTTGTTGTCGAGGAAAGTGAAGATATATCCTTAGCCCTGCTGTCCCCACTACTGGACAGCATTAAGAAAGACAATGAGGAAGTTTTTCCAATTGCCCAAAAATTGGGGGAGAGGGTTCTTGAAAATTGTGCAACCAAGCTTAAACCCTACTTGGTTCAAATAGTGAGATCCTTGGATGTATCTGTTGATGATTATAGTGCTGTACTTGCTTTAATATGCCAAGATACATCTGATGATTTGGAAAAGAATGATACATGTGTGACTAGTGAGCATGCGGAAGATAAGAGCGATTCAGAAAAACAATCACTGGAGAAGTCAACACATGTGGTTAAAAATGATTCAAGGGAAGTTACATCCTCTCAACGAGGAAATCCTGATGCAAATAAATCTCCTAACTCAGGCATGAGCTATGGTATTGCATGTGTTGGAGAAGATACTGCTTTAGCTTATTCCAATCCCATTAAAAAGAAAGAGGATACTGATTGTTCCAACCACTCTGAAGGTTTGAATATATCTGGTCATGAGGTGGGTAGAGATTTGGACAGTAAAAAAGTTGACAATAGTAAACAAAAGGCAGGAAAAGCTACCAAGAGACCACGAAAGAAAGCTACCAAGAGACCACGAAAGAAATCAAGCTCTTCTACTAAATTGGCAAAACCTTCCAAGGATCAAGTTGCTGCTAATGAGAAGGAAACTGTGAAAATGCTTGACTGTGAAAGCGACAGTAAGATAGTTCCCAGTTCCCCTCACAAGGAACATTTTGTTGAAGCAGCAGGACCTTCAGAGAGTAATAAAGAAATTGATGCTAAGATTTCATCACCAGTGGCAGTAAATGACGAATCTGAAGTGGTTGCTTCTGCTCCAAGTGAGAGCCTCAATGAAAATCACTCAAAGAAACTTGGACGATCGACAAAGGAAGATGACTCTGTAAAAGAAAGTGCTGCATATGATGTTTCTAAGGTGTCTGGAGGAGCTAGTGATTCAGAAGCCAAACCTGTGACGCGGTCAGTGAAAAAGGCACTAGGTCAAAAGTCTCTGAAAAAAACTAGTGCGGTAGATTCTATAAAAAAAGAAAGTGGGGCAACAAATAATGCAGACGCTAAGAAATACTCAGCAAAAAAATTAGAAGAAAACAAAAAGGTTAGTGGTGGATCCTCCTCAAGGCAGGCGGAAGACAGGAAAAAAGGAGGGCGTGGAAAAGCAAAGACTGAGACAGATGTAGCAAAGTCATCTGCTATGAATGTGGACAAAGAAATAATTTCTACTCCGAGGTCTTGTACAAAATCTGCCAAAGATGCAAGTTCAGATGAGAAAAGGAAACTTACTTCAGGAAAAGAAAATGAGTATGATACAAAGGAATATGGTGAAAACCTTGTCGGTTTACGGATCAAAGTTTGGTGGCCTAAGGATCGTGAGTTTTACAAGGGTATTATTGATTCTTTTGATTCTGCAAAAAAGAAGCACAAGGTATCGTATGATGATGGTGAAGAAGAAATATTAAATCTAGGGAAGGAGAAATGGAAGGTCATCGAAAAGGATTCAGATGCAGATGAGGAAGATCGGAGTGATCATGCAAGTCTTGATGCTTCCATTGATATGCAACCAAAGAAGAAAGGGAAAACAAGTGATGGTGAAACCACCAAGCAGGGAAAGATGGATGTTTCTTCCAGAAGTGGTGGAATAAAGACAAATAGTAGATCAAAAAGTGTATCCCTGAAGTCTAGTCAAAGGTCCAAAGATGGCAACAAATTGAAAGATTCCAAGACAAGTAGCAAATCTGAGGATGGAGATAATAAAAAATCTAAGGAAGACACTCCAAAAAGTCCTAGCAGTAAATCCATTGTTGCTACTAAAATACTGAATAAGAAATTGAAAAATACTGATACTTCCAGGACTGGGGAATTAAATGATGACTACAGTAGTACGCCAAAGCTGTCTTCCAAGTCTAAGCTAGACATTCTAAAAAGTGGAAAATCCAAAAAAATAACCCCAAAGACTGCCGTTTCCAAAGAAAAACCTCTCAAAAGTGGTGGAAAGACTGATGTTAATGGTACCGGCAAGATGAAATCTGATTTATTGAAGAGAAAATATTTTGAGAATGATAATTCAGATGTTTCAGAAGAAAAGCTAAAAGCTGCCAATGTCAAGACTTCAATTTCGTCTAAGGCACAAGGAAGTGAGGTCAAGAGTGGAAAGAAGCGTAGGAGAAGCTAG 3468 0.4043 MHVTKSSILSCYDTLDSSGLRMNIDLGWVVHLWWPLLLCKVIAEGFHPTTHKASSDSAYPMTSYYSHHTRQSSLSENERPLDPNMSQLPYLDHPNQPELPAVSNSPYDYLTHYVVIAKAQLNQKSDGSMMKEIKEKGINGVKHRKVVRVPVKPEKAERTQPMASADKRLEEQLLEAGKKLANPPSSAEELLSLLEANLLLILCGFDALLDFVGNNEYMEFFILVIILQHHLVWVRWHRCQRNRWFGVVPTANSDARYEDVGLGCSSVGRGVATQVESCLSRVEQSPTVSMQNALSPSLKAMVGDQLLRHSDNDVKVAVASCISEITRISAPDAPYDDDQMKEVFHLIVSSFENLHDKLSRSYAKRMSILETVAKVRSCVVMLDLECDALISDMFQHFLKGVREHHPENVVLSMETIMTVVVEESEDISLALLSPLLDSIKKDNEEVFPIAQKLGERVLENCATKLKPYLVQIVRSLDVSVDDYSAVLALICQDTSDDLEKNDTCVTSEHAEDKSDSEKQSLEKSTHVVKNDSREVTSSQRGNPDANKSPNSGMSYGIACVGEDTALAYSNPIKKKEDTDCSNHSEGLNISGHEVGRDLDSKKVDNSKQKAGKATKRPRKKATKRPRKKSSSSTKLAKPSKDQVAANEKETVKMLDCESDSKIVPSSPHKEHFVEAAGPSESNKEIDAKISSPVAVNDESEVVASAPSESLNENHSKKLGRSTKEDDSVKESAAYDVSKVSGGASDSEAKPVTRSVKKALGQKSLKKTSAVDSIKKESGATNNADAKKYSAKKLEENKKVSGGSSSRQAEDRKKGGRGKAKTETDVAKSSAMNVDKEIISTPRSCTKSAKDASSDEKRKLTSGKENEYDTKEYGENLVGLRIKVWWPKDREFYKGIIDSFDSAKKKHKVSYDDGEEEILNLGKEKWKVIEKDSDADEEDRSDHASLDASIDMQPKKKGKTSDGETTKQGKMDVSSRSGGIKTNSRSKSVSLKSSQRSKDGNKLKDSKTSSKSEDGDNKKSKEDTPKSPSSKSIVATKILNKKLKNTDTSRTGELNDDYSSTPKLSSKSKLDILKSGKSKKITPKTAVSKEKPLKSGGKTDVNGTGKMKSDLLKRKYFENDNSDVSEEKLKAANVKTSISSKAQGSEVKSGKKRRRS 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03023 1155 SUPERFAMILY ARM repeat 305 482 IPR016024 -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 575 871 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 612 633 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 504 552 - -
Vimu10g03023 1155 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 509 1058 IPR039776 GO:0007064
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 1106 1129 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 1051 1067 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 848 871 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 787 823 - -
Vimu10g03023 1155 FunFam Binding protein 872 924 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 996 1025 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 930 1155 - -
Vimu10g03023 1155 SUPERFAMILY Tudor/PWWP/MBT 875 916 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 713 732 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 504 530 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 966 995 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 531 552 - -
Vimu10g03023 1155 Gene3D - 868 920 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 590 611 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 1026 1041 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 930 965 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 1069 1095 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 641 677 - -
Vimu10g03023 1155 MobiDBLite consensus disorder prediction 825 847 - -
Vimu10g03023 1155 Pfam Sister chromatid cohesion protein PDS5 protein 274 499 - -
Vimu10g03023 1155 CDD Tudor_Agenet_AtEML-like 877 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03023 Vimu-Chr10 41108413 41119335 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03023 - - gmx:100809147 1211.05