Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03018 ATGGCTACAAGACGAACTCCAACGCTAGCCAAATCGCTTTTGGCCGCCGTAACTGCTTCTAGAACCTGTCGCTCCCGGTCCGCACGACGACTCTTCTCCGCGATCACTCGTGCTTCGGAGAATTCTCCGAATGTCCTTTCTCGGTCTCAGATTGTCGACGCACTTGCAGCCAATAATGTCGCCTCTGCCAAATTCCTCTCCCTCTCTTTCACCCGCAGCTTCCACGCCACTAATCCCTCTCTCCGCTCTGCTGCAAGCTCTCAGGTAGCGCAGACTGAATTCACAGATATGGCATGGGAGGGGATTCTTGGTGCTGTTGATGCGGCTCGGGTTAGTAAACAGCAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTTTTGGAGCAAAAGGATGGTTTGGCGCGAAGGGTATTTACCAAGGCAGGATTTGACAACACGTCTGTTCTACAGGCTACTGATGATTTTATAGCGAAGCAACCTAAGGTTACTGGCGACACTACTGGACCTGTTATTGGCTCACATCTTAGCTCCCTGTTGGACAATTCACGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAGCATCTTTTGCTTGCATTTCATTCAGATAAGAGGTTTGGGCAGCAGTTGTTTAAGAATCTTCAGCTTAGCGAGACGACTTTGAAGGATGCAATACAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAATCCGGAGGGGAAATATGAGGCATTGGATAAGTATGGAAACGATCTGACTGAACTTGCTAGGCGTGGTAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGTCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCAGTTATCATTGGTGAACCCGGTGTGGGCAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATTGTGCGTGGTGATGTTCCTGAGCCATTGATGAACAGAAAGTTGATTTCCCTTGACATGGGTTCATTGCTTGCTGGGGCCAAGTATCGAGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTAGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAAGATCCTGCTCTTGAGCGAAGATTTCAGCAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGCTATGAATTGCATCATGGAGTTAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCGGATCGATACATTACAGAGCGTTTTTTACCTGACAAAGCCATTGATCTTGTGGATGAAGCTGCTGCGAAGCTGAAGATGGAGATAACCTCTAAACCTACTGAATTGGATGAGATAGACAGAGCAATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCTGAACAATGGGACAATGAAAAAGTTTTTATGACACGAATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAACGTGATTATGACCTGAACCGCGCTGCTGAGCTCAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAACTGACTTCCGAAATTCTGGAAAATCTTTGCTTCGAGAAGAGGTCGCTGACCTTGATATTACTGAGATTGTTAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACAGAAAGAGAAAAATTAGTCTTGCTGGAACAAGTTCTTCACAAGAGAGTGGTTGGTCAGGATATGGCAGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAACCGACCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGATTAGTTGGAGCCCCTCCTGGTTATGTTGGTTACGAAGAAGGTGGTCAGCTGACTGAAGTGGTCCGGAGAAGACCCTACTCCGTGGTCCTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATATTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTTACGAATTGTGTTGTGATTATGACTTCAAACATTGGTTCGCATTATATACTTGAAACTCTTCGTAGCACACAAGATGATAAAACTGCAGTCTATGATCAGATGAAGAGACAGGTTGTTGAGTTGGCTAGGCAAACATTTCGTCCGGAGTTTATGAATCGCATTGACGAATATATTGTGTTCCAGCCTCTGGATTCCGAACAGATAAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAAAGCAGGCTTAAGCAAAAGAAAATTGATCTTCATTACACAGAAGAAGCTGTTAAACATCTTGGTGTACTGGGTTTTGATCCAAATTTTGGTGCAAGACCGGTTAAAAGAGTGATACAACAGTTGGTTGAAAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACACAATCATTGTGGATGCTGATGTGACTCCATCAGCCAAAGAACCTTCTCTGAATAGACTGCTTATTAAGAAGTTGGACAGCCCTGTTGCGGATGCCATGGTTGTCAATCACTAA 2934 0.4288 MATRRTPTLAKSLLAAVTASRTCRSRSARRLFSAITRASENSPNVLSRSQIVDALAANNVASAKFLSLSFTRSFHATNPSLRSAASSQVAQTEFTDMAWEGILGAVDAARVSKQQIVESEHLMKALLEQKDGLARRVFTKAGFDNTSVLQATDDFIAKQPKVTGDTTGPVIGSHLSSLLDNSRKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSETTLKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDNEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLTDFRNSGKSLLREEVADLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDMAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRSTQDDKTAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKSRLKQKKIDLHYTEEAVKHLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDTIIVDADVTPSAKEPSLNRLLIKKLDSPVADAMVVNH 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03018 977 Gene3D - 864 974 - -
Vimu10g03018 977 Pfam AAA lid domain 430 532 IPR041546 -
Vimu10g03018 977 Pfam Clp amino terminal domain, pathogenicity island component 184 233 IPR004176 -
Vimu10g03018 977 Pfam Clp amino terminal domain, pathogenicity island component 105 156 IPR004176 -
Vimu10g03018 977 ProSitePatterns Chaperonins clpA/B signature 1. 382 394 IPR018368 GO:0005524
Vimu10g03018 977 Pfam C-terminal, D2-small domain, of ClpB protein 864 944 IPR019489 -
Vimu10g03018 977 FunFam ATP-dependent chaperone ClpB 864 953 - -
Vimu10g03018 977 ProSitePatterns Chaperonins clpA/B signature 2. 723 741 IPR028299 -
Vimu10g03018 977 FunFam Chaperone clpB 1, putative 237 430 - -
Vimu10g03018 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 945 IPR027417 -
Vimu10g03018 977 SMART ClpB_D2_small_2 864 957 IPR019489 -
Vimu10g03018 977 CDD AAA 269 426 - -
Vimu10g03018 977 CDD RecA-like_ClpB_Hsp104-like 650 861 - -
Vimu10g03018 977 SUPERFAMILY Double Clp-N motif 93 244 IPR036628 -
Vimu10g03018 977 Coils Coil 587 621 - -
Vimu10g03018 977 Gene3D - 431 636 IPR027417 -
Vimu10g03018 977 Coils Coil 560 580 - -
Vimu10g03018 977 Coils Coil 522 549 - -
Vimu10g03018 977 Gene3D - 641 862 IPR027417 -
Vimu10g03018 977 ProSiteProfiles Clp repeat (R) domain profile. 89 234 IPR004176 -
Vimu10g03018 977 PANTHER ATP-DEPENDENT CLP PROTEASE 95 954 - -
Vimu10g03018 977 Gene3D - 91 236 IPR036628 -
Vimu10g03018 977 FunFam ATP-dependent Clp protease subunit 642 862 - -
Vimu10g03018 977 FunFam Chaperone protein ClpB3, chloroplastic 90 236 - -
Vimu10g03018 977 SMART AAA_5 286 430 IPR003593 GO:0016887
Vimu10g03018 977 SMART AAA_5 689 846 IPR003593 GO:0016887
Vimu10g03018 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 637 IPR027417 -
Vimu10g03018 977 Pfam AAA domain (Cdc48 subfamily) 688 857 IPR003959 GO:0005524|GO:0016887
Vimu10g03018 977 Gene3D - 237 430 IPR027417 -
Vimu10g03018 977 Coils Coil 500 520 - -
Vimu10g03018 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 693 711 IPR001270 GO:0005524
Vimu10g03018 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 767 785 IPR001270 GO:0005524
Vimu10g03018 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 738 756 IPR001270 GO:0005524
Vimu10g03018 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 800 814 IPR001270 GO:0005524
Vimu10g03018 977 NCBIfam ATP-dependent chaperone ClpB 94 947 IPR017730 GO:0005737|GO:0009408|GO:0042026
Vimu10g03018 977 FunFam ATP-dependent chaperone ClpB 431 636 - -
Vimu10g03018 977 Pfam ATPase family associated with various cellular activities (AAA) 292 425 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03018 Vimu-Chr10 41074817 41082466 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03018 K03695 - gmx:100782242 1762.27