Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02998 ATGATGGAATCCGGTGCTCACTTCTGCAACTCTTGTGGTGAACAAGTTGGACATGATGCTAATGGGGAGCTGTTTGTGGCTTGTCATGAATGCTATTTCCCAATTTGCAAGGCTTGTTTTGAATATGAAGTCAATGAGGGTCGTAAGGTCTGCTTGAGATGTGCCACTCCCTATGCCGATAGAGCAAAAGATAATGATGACACCAAGGGTTATGGAAATCAATCCACTATGGCTGCCCAGATCGATGTTTCTCAGGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAACTTAACGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTGGAAAGCTGGAAGGAAAAGGATAAAAAGAACAAGAAGAAAAAGTCTGCACCTAAGGCTCAAAATGAGGCACCAATTCCACAAGAACAGCAGATGGAAGAAATACAGTCCTCAGAGGCTGCAGCTGCTGAGCCACTTTCAGCGATTATTCCTATCCCAAAAACGAGAATCACACCATACCGAATTGTGATAGTCGTGCGACTTATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACATCCATCATCTGTGAGATCTGGTTTGCATTTTCCTGGGTATTAGATCAGTTCCCTAAATGGTGTCCCATCAACAGGGACACTTTTATTGACAGGCTTTCTGCAAGATATGAAAGGCCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTAAAAGAACCTCCATTGATCACTGCTAACACAGTGCTTTCAATTCTTGCTGTGGACTACCCTGTGGATAAAGTATCCTGTTATGTGTCTGATGATGGTGCTGCAATGCTGACATTTGAGTCCCTTGTGGAAACAGCTGACTTTGCAAGAAAATGGATTCCATTTTGCAAAAAGTTTTCAATTGAACCACGTGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTTAAGGACAAAGTACAACCTTCTTTTGTAAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGAGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACCTCATGGCCAGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCATGACATAGAAGGAAATGAACTTCCCAGATTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTTATTCTCAATCTTGATTGTGATCATTATGTGAACAATAGCCAGGCTGTTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATTTGTGCTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGTCTTGATGGCATTCAAGGACCTATGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGTTACAGCCCACCTTCCATGCCCAAATTATCAAAATCATCATCCTGTTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGATGTCTCGGAGCTTTATAGAGATGCAAAGAGGGAAGAACTCGATGCGGCCATTTTTAATCTTAGGGAGATTGACAATTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTAATGGAAAGTGGAGGCCTGCCAGAATCTGCTGATCCATCAATGCTGATCAAAGAGGCCATTCATGTTATTAGCTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGGTTACTCTCAAATGCCAATGCTCTTCACCAATTGGATGGATCTATGGTTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCAATGCCGTGGATGGAGATCAGTGTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGGTTGCATCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATCTTCTTCAGTAGACATTGTCCCCTCTGGTATGGTTTTGCAGGAGGTCGCCTCAAATGGCTGCAGAGACTTGCTTACATAAACACCATTGTATACCCATTTACATCCCTTCCTCTCGTTGCTTATTGCACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCGAACCTTGCAAGTGCTCTCTTTCTTGGACTTTTCCTGTCCATTATAATCACTAGTGTGCTTGAGCTGCGGTGGAGTGGAGTGACCATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCTCATCTGTTTGCTGTGTTCCAAGGATTCCTGAAGATGCTGGCTGGTGTTGACACTAACTTCACTGTCACCGCCAAAGCTGCTGAAGACACTGAGTTTGGTGAACTATATATCATCAAGTGGACCACACTCTTAATTCCTCCAACCACCCTTATTGTTATTAACATAGTTGGTGTTGTGGCTGGCTTTTCTGATGCACTTAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTTTGGGTTATTTTCCATCTCTATCCATTCCTCAAGGGTCTGATGGGTCGCCAAAATCGTACTCCAACCGTTGTTATTCTGTGGTCAGTGTTGTTGGCGTCTGTCTTCTCTCTGGTGTGGGTGAAGATTAACCCTTTTATCAGCAGAGCTGACAGTTCAAGCATCTCCCAGACCTGCATTTCAATAGATTGTTAA 2958 0.4334 MMESGAHFCNSCGEQVGHDANGELFVACHECYFPICKACFEYEVNEGRKVCLRCATPYADRAKDNDDTKGYGNQSTMAAQIDVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKNKKKKSAPKAQNEAPIPQEQQMEEIQSSEAAAAEPLSAIIPIPKTRITPYRIVIVVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWCPINRDTFIDRLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWIPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLSKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMESGGLPESADPSMLIKEAIHVISCGYEEKTAWGKEVTLKCQCSSPIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIITSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDTEFGELYIIKWTTLLIPPTTLIVINIVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTVVILWSVLLASVFSLVWVKINPFISRADSSSISQTCISIDC 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02998 985 Pfam Zinc-binding RING-finger 5 60 IPR027934 -
Vimu10g02998 985 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 160 950 - -
Vimu10g02998 985 FunFam Cellulose synthase 1 82 - -
Vimu10g02998 985 SUPERFAMILY RING/U-box 2 70 - -
Vimu10g02998 985 MobiDBLite consensus disorder prediction 100 154 - -
Vimu10g02998 985 FunFam Cellulose synthase 373 547 - -
Vimu10g02998 985 MobiDBLite consensus disorder prediction 139 153 - -
Vimu10g02998 985 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 778 IPR029044 -
Vimu10g02998 985 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 547 IPR029044 -
Vimu10g02998 985 Pfam Cellulose synthase 256 976 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu10g02998 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02998 Vimu-Chr10 40901542 40906548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02998 1 985 Glycosyltransferase AT4G18780 81.005 0.0 1665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02998 K10999 - gmx:100806522 1843.94