Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02992 CTTAAACATCAGTGTGAGAAAAGCAAAAAGATGTATAGAGTAGCAAAGGCATCAGAGTATCTTGTGATCACTGGGGTTGGAATCACAGACATAAAGCTTGCAAAAAAAGCATGGATTCTCCCAGGCCAGTCATGCAGCGTCTTCGACCTCTCTCCTGTGAATTACACTTTCGAGGTTCAAGCCATGAGCGCAGAGAAGCTCCCTTTCATTCTCCCCGCTGTCTTCACCATCGGTCCCAGAGTCGACAACCACGACAGCCTTCTCAAATACGCCAAACTTCTCTCTTCCCACGACAAGCTCTCTCACCACGTTAAGGAGCTAGTCCAGGGCATCATCGAAGGAGAGACACGTGTCCTTGCAGCATCCATGACCATGGAGGATGTTTTCAGAGGCACCAAGTCGTTTAAACAGGAAGTGTTTGACAAGGTTCAGTTGGAGCTCAACCAATTTGGGCTTCTCATCTACAACGCCAACGTGAAGCAACTGGTGGACGTGGTTGGCCATGAGTACTTCTCTTATTTGGGTCAGAAGACTCAGATGGAGGCTGCCAACCAAGCCAAGGTTGACGTGGCAGAGGCAAGGATGAAGGGAGAGGTCGGAGCCAAGTCGAGGGAGGGGCAGACGTTGCAGAACGCTGCGAGGATCGATGCCGAGACTAAGATAATATCGACGCAGAGGCATGGAGAGGGAGTGAAGGAGGAGATAAAGGTGAAGACGGAGGTGAAGGTGTTTGAGAATGAGCGAGAGGCGGTGGTGGCGGAGGCTAATTCTGAGCTTGCGAAGAAGAAAGCCGTGTGGGCACAAACGGCGCAGGTGGCAGAAGTGGAGGCCATAAAAGCAGTGGCACTAAGGGAAGCCGAGTTGCAGAGAGAGGTTGAGAGGATGAACGCGCTCACCATGACAGAGAAGCTTAAAGCCGAGTTCCTCAGCAAAGCAAGTGTTGAGTACGAAACTAAAGTACAAGAGGCGAATTGGGAGCTGTACAAGAAGCAAAAAGCTGCAGAAGCAATACTGTTTGAGAAGGAGAAGGAGGCAGAAGCACAAAAAGCACTAGCAGAGGCAGCATATTACAGTCGACAACAAGCAGCAGAGGCAGAGCTATTTGCAAAGAAAAAGGAGGCGGAGGGACTTGTGGCAATTGGAGAAGCCCAAGGGGTATACTTGAGAACACTTCTTGATGCACTGGGAGGCAAGTACAGTAATCTAAGGGACTACTTAATGATAAATAATGGGATGTTTCAAGAGATTGCGAAGACTAATGCAGAAGCCATTAGAGGACTTGAGCCAAAGATCAGTATTTGGACTAATGGCGGAAATGGAAGTGATGTTGGTGGTGGAATGAAGGATGTAGCTAATGTTTACAAGATGTTACCACCTTTGTTTAACACAGTGCATGAGCAAACTGGTATGCTGCCACCCGCTTGGATGGGAACCCTATCTGACAAAACTTCTTAA 1455 0.4866 LKHQCEKSKKMYRVAKASEYLVITGVGITDIKLAKKAWILPGQSCSVFDLSPVNYTFEVQAMSAEKLPFILPAVFTIGPRVDNHDSLLKYAKLLSSHDKLSHHVKELVQGIIEGETRVLAASMTMEDVFRGTKSFKQEVFDKVQLELNQFGLLIYNANVKQLVDVVGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKSREGQTLQNAARIDAETKIISTQRHGEGVKEEIKVKTEVKVFENEREAVVAEANSELAKKKAVWAQTAQVAEVEAIKAVALREAELQREVERMNALTMTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAILFEKEKEAEAQKALAEAAYYSRQQAAEAELFAKKKEAEGLVAIGEAQGVYLRTLLDALGGKYSNLRDYLMINNGMFQEIAKTNAEAIRGLEPKISIWTNGGNGSDVGGGMKDVANVYKMLPPLFNTVHEQTGMLPPAWMGTLSDKTS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02992 484 Coils Coil 278 298 - -
Vimu10g02992 484 Pfam SPFH domain / Band 7 family 20 193 IPR001107 -
Vimu10g02992 484 SUPERFAMILY Band 7/SPFH domain 43 182 IPR036013 -
Vimu10g02992 484 PANTHER FLOTILLIN-RELATED 6 481 IPR027705 -
Vimu10g02992 484 Gene3D Band 7 domain 48 165 IPR036013 -
Vimu10g02992 484 CDD SPFH_flotillin 38 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02992 Vimu-Chr10 40831492 40833035 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02992 K07192 - gmx:547522 777.704